Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20730

Experiment: m.b. Spectinomycin 0.08 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20725 and CA264_20730 are separated by 140 nucleotidesCA264_20730 and CA264_20735 are separated by 11 nucleotides CA264_20725: CA264_20725 - glycogen debranching enzyme, at 2,033 to 4,072 _20725 CA264_20730: CA264_20730 - hypothetical protein, at 4,213 to 5,331 _20730 CA264_20735: CA264_20735 - hypothetical protein, at 5,343 to 6,662 _20735 Position (kb) 4 5 6Strain fitness (log2 ratio) -3 -2 -1 0 1at 3.372 kb on + strand, within CA264_20725at 3.406 kb on + strand, within CA264_20725at 3.407 kb on - strand, within CA264_20725at 3.407 kb on - strand, within CA264_20725at 3.408 kb on + strand, within CA264_20725at 3.408 kb on + strand, within CA264_20725at 3.417 kb on + strand, within CA264_20725at 3.417 kb on + strand, within CA264_20725at 3.418 kb on - strand, within CA264_20725at 3.438 kb on + strand, within CA264_20725at 3.438 kb on + strand, within CA264_20725at 3.439 kb on - strand, within CA264_20725at 3.473 kb on - strand, within CA264_20725at 3.473 kb on - strand, within CA264_20725at 3.473 kb on - strand, within CA264_20725at 3.489 kb on + strand, within CA264_20725at 3.490 kb on - strand, within CA264_20725at 3.494 kb on + strand, within CA264_20725at 3.495 kb on - strand, within CA264_20725at 3.495 kb on - strand, within CA264_20725at 3.515 kb on - strand, within CA264_20725at 3.585 kb on + strand, within CA264_20725at 3.586 kb on - strand, within CA264_20725at 3.586 kb on - strand, within CA264_20725at 3.586 kb on - strand, within CA264_20725at 3.587 kb on + strand, within CA264_20725at 3.587 kb on + strand, within CA264_20725at 3.587 kb on + strand, within CA264_20725at 3.589 kb on + strand, within CA264_20725at 3.643 kb on + strand, within CA264_20725at 3.643 kb on + strand, within CA264_20725at 3.653 kb on + strand, within CA264_20725at 3.653 kb on + strand, within CA264_20725at 3.653 kb on + strand, within CA264_20725at 3.654 kb on - strand, within CA264_20725at 3.660 kb on + strand, within CA264_20725at 3.661 kb on - strand, within CA264_20725at 3.734 kb on + strand, within CA264_20725at 3.735 kb on - strand, within CA264_20725at 3.789 kb on - strand, within CA264_20725at 3.828 kb on + strand, within CA264_20725at 3.828 kb on + strand, within CA264_20725at 3.828 kb on + strand, within CA264_20725at 3.829 kb on - strand, within CA264_20725at 3.829 kb on - strand, within CA264_20725at 3.890 kb on - strandat 3.890 kb on - strandat 3.935 kb on + strandat 4.026 kb on - strandat 4.026 kb on - strandat 4.054 kb on + strandat 4.086 kb on - strandat 4.087 kb on + strandat 4.087 kb on + strandat 4.097 kb on + strandat 4.097 kb on + strandat 4.098 kb on - strandat 4.098 kb on - strandat 4.098 kb on - strandat 4.107 kb on + strandat 4.107 kb on + strandat 4.107 kb on + strandat 4.108 kb on - strandat 4.110 kb on - strandat 4.175 kb on + strandat 4.357 kb on + strand, within CA264_20730at 4.479 kb on - strand, within CA264_20730at 4.479 kb on - strand, within CA264_20730at 4.592 kb on + strand, within CA264_20730at 4.593 kb on - strand, within CA264_20730at 4.593 kb on - strand, within CA264_20730at 4.665 kb on + strand, within CA264_20730at 4.666 kb on - strand, within CA264_20730at 4.666 kb on - strand, within CA264_20730at 4.667 kb on + strand, within CA264_20730at 4.667 kb on + strand, within CA264_20730at 4.668 kb on - strand, within CA264_20730at 4.668 kb on - strand, within CA264_20730at 4.737 kb on - strand, within CA264_20730at 4.856 kb on + strand, within CA264_20730at 4.857 kb on - strand, within CA264_20730at 4.945 kb on + strand, within CA264_20730at 4.945 kb on + strand, within CA264_20730at 4.946 kb on - strand, within CA264_20730at 4.946 kb on - strand, within CA264_20730at 4.946 kb on - strand, within CA264_20730at 4.991 kb on + strand, within CA264_20730at 4.991 kb on + strand, within CA264_20730at 4.991 kb on + strand, within CA264_20730at 4.992 kb on - strand, within CA264_20730at 5.122 kb on + strand, within CA264_20730at 5.122 kb on + strand, within CA264_20730at 5.131 kb on + strand, within CA264_20730at 5.131 kb on + strand, within CA264_20730at 5.132 kb on - strand, within CA264_20730at 5.132 kb on - strand, within CA264_20730at 5.133 kb on + strand, within CA264_20730at 5.134 kb on - strand, within CA264_20730at 5.141 kb on - strand, within CA264_20730at 5.141 kb on - strand, within CA264_20730at 5.171 kb on + strand, within CA264_20730at 5.173 kb on + strand, within CA264_20730at 5.174 kb on - strand, within CA264_20730at 5.174 kb on - strand, within CA264_20730at 5.174 kb on - strand, within CA264_20730at 5.174 kb on - strand, within CA264_20730at 5.191 kb on + strand, within CA264_20730at 5.191 kb on + strand, within CA264_20730at 5.191 kb on + strand, within CA264_20730at 5.308 kb on + strandat 5.310 kb on + strandat 5.352 kb on + strandat 5.352 kb on + strandat 5.353 kb on - strandat 5.353 kb on - strandat 5.424 kb on + strandat 5.424 kb on + strandat 5.425 kb on - strandat 5.542 kb on + strand, within CA264_20735at 5.542 kb on + strand, within CA264_20735at 5.623 kb on - strand, within CA264_20735at 5.647 kb on + strand, within CA264_20735at 5.664 kb on - strand, within CA264_20735at 5.860 kb on + strand, within CA264_20735at 5.860 kb on + strand, within CA264_20735at 5.860 kb on + strand, within CA264_20735at 5.861 kb on - strand, within CA264_20735at 5.875 kb on - strand, within CA264_20735at 5.993 kb on + strand, within CA264_20735at 5.998 kb on - strand, within CA264_20735at 6.004 kb on + strand, within CA264_20735at 6.004 kb on + strand, within CA264_20735at 6.004 kb on + strand, within CA264_20735at 6.004 kb on + strand, within CA264_20735at 6.004 kb on + strand, within CA264_20735at 6.005 kb on - strand, within CA264_20735at 6.013 kb on + strand, within CA264_20735at 6.069 kb on + strand, within CA264_20735at 6.157 kb on - strand, within CA264_20735at 6.227 kb on - strand, within CA264_20735at 6.227 kb on - strand, within CA264_20735at 6.227 kb on - strand, within CA264_20735at 6.238 kb on + strand, within CA264_20735at 6.243 kb on + strand, within CA264_20735at 6.245 kb on + strand, within CA264_20735at 6.245 kb on + strand, within CA264_20735at 6.246 kb on - strand, within CA264_20735at 6.246 kb on - strand, within CA264_20735at 6.247 kb on + strand, within CA264_20735at 6.316 kb on + strand, within CA264_20735at 6.316 kb on + strand, within CA264_20735at 6.317 kb on - strand, within CA264_20735at 6.317 kb on - strand, within CA264_20735

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.08 mg/ml
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3,372 + CA264_20725 0.66 +0.4
3,406 + CA264_20725 0.67 +1.7
3,407 - CA264_20725 0.67 -1.0
3,407 - CA264_20725 0.67 -0.0
3,408 + CA264_20725 0.67 -0.5
3,408 + CA264_20725 0.67 -0.4
3,417 + CA264_20725 0.68 -0.3
3,417 + CA264_20725 0.68 +0.0
3,418 - CA264_20725 0.68 -0.8
3,438 + CA264_20725 0.69 +0.2
3,438 + CA264_20725 0.69 -0.0
3,439 - CA264_20725 0.69 -1.7
3,473 - CA264_20725 0.71 -0.2
3,473 - CA264_20725 0.71 -0.8
3,473 - CA264_20725 0.71 -1.5
3,489 + CA264_20725 0.71 -0.7
3,490 - CA264_20725 0.71 -2.3
3,494 + CA264_20725 0.72 +1.2
3,495 - CA264_20725 0.72 -0.3
3,495 - CA264_20725 0.72 -1.0
3,515 - CA264_20725 0.73 +0.7
3,585 + CA264_20725 0.76 +0.7
3,586 - CA264_20725 0.76 -2.8
3,586 - CA264_20725 0.76 -1.3
3,586 - CA264_20725 0.76 -0.4
3,587 + CA264_20725 0.76 +0.2
3,587 + CA264_20725 0.76 -1.9
3,587 + CA264_20725 0.76 -0.7
3,589 + CA264_20725 0.76 -1.0
3,643 + CA264_20725 0.79 +1.3
3,643 + CA264_20725 0.79 +0.4
3,653 + CA264_20725 0.79 -1.9
3,653 + CA264_20725 0.79 -0.5
3,653 + CA264_20725 0.79 -0.4
3,654 - CA264_20725 0.79 -0.5
3,660 + CA264_20725 0.80 -0.6
3,661 - CA264_20725 0.80 -0.7
3,734 + CA264_20725 0.83 -0.4
3,735 - CA264_20725 0.83 -1.0
3,789 - CA264_20725 0.86 -2.3
3,828 + CA264_20725 0.88 +0.4
3,828 + CA264_20725 0.88 -0.3
3,828 + CA264_20725 0.88 -0.1
3,829 - CA264_20725 0.88 -0.1
3,829 - CA264_20725 0.88 -1.6
3,890 - -0.6
3,890 - -0.0
3,935 + -1.0
4,026 - -0.3
4,026 - -0.1
4,054 + +0.1
4,086 - -2.0
4,087 + +0.2
4,087 + -0.8
4,097 + -0.4
4,097 + -1.3
4,098 - -1.4
4,098 - -0.6
4,098 - +0.7
4,107 + -0.7
4,107 + -0.6
4,107 + -0.1
4,108 - +0.7
4,110 - -1.2
4,175 + +0.6
4,357 + CA264_20730 0.13 +1.4
4,479 - CA264_20730 0.24 +0.7
4,479 - CA264_20730 0.24 +0.0
4,592 + CA264_20730 0.34 -0.6
4,593 - CA264_20730 0.34 -1.1
4,593 - CA264_20730 0.34 -1.4
4,665 + CA264_20730 0.40 -0.1
4,666 - CA264_20730 0.40 -0.4
4,666 - CA264_20730 0.40 -1.3
4,667 + CA264_20730 0.41 -1.2
4,667 + CA264_20730 0.41 -0.7
4,668 - CA264_20730 0.41 -0.6
4,668 - CA264_20730 0.41 +0.4
4,737 - CA264_20730 0.47 -0.7
4,856 + CA264_20730 0.57 +0.5
4,857 - CA264_20730 0.58 -1.5
4,945 + CA264_20730 0.65 -0.5
4,945 + CA264_20730 0.65 +1.2
4,946 - CA264_20730 0.66 -1.6
4,946 - CA264_20730 0.66 -1.7
4,946 - CA264_20730 0.66 -0.8
4,991 + CA264_20730 0.70 -0.4
4,991 + CA264_20730 0.70 -0.9
4,991 + CA264_20730 0.70 +0.2
4,992 - CA264_20730 0.70 -0.5
5,122 + CA264_20730 0.81 +0.1
5,122 + CA264_20730 0.81 +0.7
5,131 + CA264_20730 0.82 -0.3
5,131 + CA264_20730 0.82 -1.9
5,132 - CA264_20730 0.82 -0.0
5,132 - CA264_20730 0.82 -0.6
5,133 + CA264_20730 0.82 -0.5
5,134 - CA264_20730 0.82 +0.2
5,141 - CA264_20730 0.83 +0.1
5,141 - CA264_20730 0.83 -0.9
5,171 + CA264_20730 0.86 -0.3
5,173 + CA264_20730 0.86 -0.2
5,174 - CA264_20730 0.86 -0.8
5,174 - CA264_20730 0.86 -3.2
5,174 - CA264_20730 0.86 -0.4
5,174 - CA264_20730 0.86 -0.4
5,191 + CA264_20730 0.87 -0.6
5,191 + CA264_20730 0.87 -0.9
5,191 + CA264_20730 0.87 +1.2
5,308 + -1.4
5,310 + -0.9
5,352 + -0.9
5,352 + +0.1
5,353 - -0.3
5,353 - -0.0
5,424 + -0.3
5,424 + -0.4
5,425 - -2.8
5,542 + CA264_20735 0.15 +0.2
5,542 + CA264_20735 0.15 +1.0
5,623 - CA264_20735 0.21 -1.3
5,647 + CA264_20735 0.23 +0.5
5,664 - CA264_20735 0.24 -1.9
5,860 + CA264_20735 0.39 +0.5
5,860 + CA264_20735 0.39 -1.3
5,860 + CA264_20735 0.39 +0.1
5,861 - CA264_20735 0.39 +0.1
5,875 - CA264_20735 0.40 -0.3
5,993 + CA264_20735 0.49 -0.3
5,998 - CA264_20735 0.50 -0.8
6,004 + CA264_20735 0.50 +0.6
6,004 + CA264_20735 0.50 +0.4
6,004 + CA264_20735 0.50 -0.1
6,004 + CA264_20735 0.50 +1.0
6,004 + CA264_20735 0.50 +0.6
6,005 - CA264_20735 0.50 -1.3
6,013 + CA264_20735 0.51 +0.0
6,069 + CA264_20735 0.55 +0.2
6,157 - CA264_20735 0.62 -0.5
6,227 - CA264_20735 0.67 -1.6
6,227 - CA264_20735 0.67 -1.4
6,227 - CA264_20735 0.67 -0.5
6,238 + CA264_20735 0.68 -0.4
6,243 + CA264_20735 0.68 -0.1
6,245 + CA264_20735 0.68 -1.1
6,245 + CA264_20735 0.68 +0.8
6,246 - CA264_20735 0.68 -0.3
6,246 - CA264_20735 0.68 -0.2
6,247 + CA264_20735 0.68 -0.1
6,316 + CA264_20735 0.74 -0.6
6,316 + CA264_20735 0.74 -0.2
6,317 - CA264_20735 0.74 -0.3
6,317 - CA264_20735 0.74 -0.4

Or see this region's nucleotide sequence