Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19585

Experiment: m.b. Spectinomycin 0.08 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19575 and CA264_19580 are separated by 12 nucleotidesCA264_19580 and CA264_19585 are separated by 8 nucleotidesCA264_19585 and CA264_19590 are separated by 151 nucleotidesCA264_19590 and CA264_19595 are separated by 179 nucleotides CA264_19575: CA264_19575 - N-acyl-L-amino acid amidohydrolase, at 4,522,879 to 4,524,069 _19575 CA264_19580: CA264_19580 - hypothetical protein, at 4,524,082 to 4,524,684 _19580 CA264_19585: CA264_19585 - hypothetical protein, at 4,524,693 to 4,525,493 _19585 CA264_19590: CA264_19590 - heat-shock protein Hsp20, at 4,525,645 to 4,526,151 _19590 CA264_19595: CA264_19595 - deoxyribonuclease HsdR, at 4,526,331 to 4,527,821 _19595 Position (kb) 4524 4525 4526Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4524.154 kb on - strand, within CA264_19580at 4524.236 kb on + strand, within CA264_19580at 4524.236 kb on + strand, within CA264_19580at 4524.236 kb on + strand, within CA264_19580at 4524.237 kb on - strand, within CA264_19580at 4524.237 kb on - strand, within CA264_19580at 4524.237 kb on - strand, within CA264_19580at 4524.258 kb on + strand, within CA264_19580at 4524.303 kb on - strand, within CA264_19580at 4524.346 kb on + strand, within CA264_19580at 4524.347 kb on - strand, within CA264_19580at 4524.375 kb on + strand, within CA264_19580at 4524.376 kb on - strand, within CA264_19580at 4524.379 kb on + strand, within CA264_19580at 4524.379 kb on + strand, within CA264_19580at 4524.380 kb on - strand, within CA264_19580at 4524.380 kb on - strand, within CA264_19580at 4524.380 kb on - strand, within CA264_19580at 4524.380 kb on - strand, within CA264_19580at 4524.387 kb on + strand, within CA264_19580at 4524.388 kb on - strand, within CA264_19580at 4524.409 kb on + strand, within CA264_19580at 4524.413 kb on - strand, within CA264_19580at 4524.458 kb on + strand, within CA264_19580at 4524.505 kb on + strand, within CA264_19580at 4524.505 kb on + strand, within CA264_19580at 4524.505 kb on + strand, within CA264_19580at 4524.506 kb on - strand, within CA264_19580at 4524.580 kb on + strand, within CA264_19580at 4524.621 kb on - strand, within CA264_19580at 4524.641 kb on + strandat 4524.706 kb on + strandat 4524.707 kb on - strandat 4524.708 kb on + strandat 4524.721 kb on + strandat 4524.973 kb on + strand, within CA264_19585at 4524.974 kb on - strand, within CA264_19585at 4525.046 kb on + strand, within CA264_19585at 4525.057 kb on - strand, within CA264_19585at 4525.057 kb on - strand, within CA264_19585at 4525.083 kb on + strand, within CA264_19585at 4525.087 kb on + strand, within CA264_19585at 4525.322 kb on + strand, within CA264_19585at 4525.323 kb on - strand, within CA264_19585at 4525.338 kb on + strand, within CA264_19585at 4525.339 kb on - strand, within CA264_19585at 4525.341 kb on + strand, within CA264_19585at 4525.341 kb on + strand, within CA264_19585at 4525.341 kb on + strand, within CA264_19585at 4525.341 kb on + strand, within CA264_19585at 4525.342 kb on - strand, within CA264_19585at 4525.342 kb on - strand, within CA264_19585at 4525.342 kb on - strand, within CA264_19585at 4525.345 kb on - strand, within CA264_19585at 4525.345 kb on - strand, within CA264_19585at 4525.368 kb on - strand, within CA264_19585at 4525.399 kb on - strand, within CA264_19585at 4525.449 kb on + strandat 4525.450 kb on - strandat 4525.481 kb on + strandat 4525.484 kb on + strandat 4525.526 kb on - strandat 4525.596 kb on + strandat 4525.622 kb on - strandat 4525.638 kb on + strandat 4525.638 kb on + strandat 4525.638 kb on + strandat 4525.644 kb on + strandat 4525.645 kb on - strandat 4525.653 kb on + strandat 4525.654 kb on - strandat 4525.660 kb on + strandat 4525.661 kb on - strandat 4525.702 kb on - strand, within CA264_19590at 4525.756 kb on - strand, within CA264_19590at 4525.958 kb on - strand, within CA264_19590at 4525.958 kb on - strand, within CA264_19590at 4525.989 kb on + strand, within CA264_19590at 4525.989 kb on + strand, within CA264_19590at 4525.989 kb on + strand, within CA264_19590at 4525.989 kb on + strand, within CA264_19590at 4526.205 kb on - strandat 4526.214 kb on + strandat 4526.227 kb on + strandat 4526.240 kb on + strandat 4526.250 kb on + strandat 4526.251 kb on - strandat 4526.251 kb on - strandat 4526.267 kb on - strandat 4526.267 kb on - strandat 4526.271 kb on - strandat 4526.271 kb on - strandat 4526.279 kb on + strandat 4526.280 kb on - strandat 4526.280 kb on - strandat 4526.293 kb on - strandat 4526.299 kb on + strandat 4526.301 kb on + strandat 4526.304 kb on + strandat 4526.304 kb on + strandat 4526.306 kb on + strandat 4526.311 kb on + strandat 4526.404 kb on - strandat 4526.458 kb on + strandat 4526.458 kb on + strandat 4526.458 kb on + strandat 4526.465 kb on + strandat 4526.466 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.08 mg/ml
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4,524,154 - CA264_19580 0.12 -0.3
4,524,236 + CA264_19580 0.26 +0.9
4,524,236 + CA264_19580 0.26 +0.4
4,524,236 + CA264_19580 0.26 -0.7
4,524,237 - CA264_19580 0.26 +1.0
4,524,237 - CA264_19580 0.26 +0.1
4,524,237 - CA264_19580 0.26 +0.4
4,524,258 + CA264_19580 0.29 +1.4
4,524,303 - CA264_19580 0.37 -1.9
4,524,346 + CA264_19580 0.44 +1.6
4,524,347 - CA264_19580 0.44 -0.7
4,524,375 + CA264_19580 0.49 +0.1
4,524,376 - CA264_19580 0.49 +0.4
4,524,379 + CA264_19580 0.49 -0.5
4,524,379 + CA264_19580 0.49 -0.7
4,524,380 - CA264_19580 0.49 +0.2
4,524,380 - CA264_19580 0.49 +0.6
4,524,380 - CA264_19580 0.49 +0.5
4,524,380 - CA264_19580 0.49 +1.0
4,524,387 + CA264_19580 0.51 +1.6
4,524,388 - CA264_19580 0.51 +0.6
4,524,409 + CA264_19580 0.54 -0.2
4,524,413 - CA264_19580 0.55 +0.3
4,524,458 + CA264_19580 0.62 -0.2
4,524,505 + CA264_19580 0.70 +0.7
4,524,505 + CA264_19580 0.70 -0.3
4,524,505 + CA264_19580 0.70 +0.2
4,524,506 - CA264_19580 0.70 -0.5
4,524,580 + CA264_19580 0.83 +0.8
4,524,621 - CA264_19580 0.89 +0.5
4,524,641 + +0.0
4,524,706 + +0.5
4,524,707 - +1.8
4,524,708 + -0.9
4,524,721 + +1.4
4,524,973 + CA264_19585 0.35 +0.3
4,524,974 - CA264_19585 0.35 +2.0
4,525,046 + CA264_19585 0.44 -0.9
4,525,057 - CA264_19585 0.45 +0.6
4,525,057 - CA264_19585 0.45 +1.5
4,525,083 + CA264_19585 0.49 +0.1
4,525,087 + CA264_19585 0.49 +0.2
4,525,322 + CA264_19585 0.79 -1.2
4,525,323 - CA264_19585 0.79 -0.1
4,525,338 + CA264_19585 0.81 +1.7
4,525,339 - CA264_19585 0.81 +0.4
4,525,341 + CA264_19585 0.81 -0.2
4,525,341 + CA264_19585 0.81 -0.0
4,525,341 + CA264_19585 0.81 +0.6
4,525,341 + CA264_19585 0.81 +0.9
4,525,342 - CA264_19585 0.81 -0.2
4,525,342 - CA264_19585 0.81 -0.9
4,525,342 - CA264_19585 0.81 +0.1
4,525,345 - CA264_19585 0.81 +0.9
4,525,345 - CA264_19585 0.81 -0.1
4,525,368 - CA264_19585 0.84 +0.4
4,525,399 - CA264_19585 0.88 +0.7
4,525,449 + +0.4
4,525,450 - +2.1
4,525,481 + +0.0
4,525,484 + -1.0
4,525,526 - +2.4
4,525,596 + -0.9
4,525,622 - -0.2
4,525,638 + -0.2
4,525,638 + +1.0
4,525,638 + -0.2
4,525,644 + -0.1
4,525,645 - +0.4
4,525,653 + -0.4
4,525,654 - -0.2
4,525,660 + +0.1
4,525,661 - +1.7
4,525,702 - CA264_19590 0.11 -0.3
4,525,756 - CA264_19590 0.22 -0.8
4,525,958 - CA264_19590 0.62 -1.6
4,525,958 - CA264_19590 0.62 -0.5
4,525,989 + CA264_19590 0.68 +2.0
4,525,989 + CA264_19590 0.68 +0.0
4,525,989 + CA264_19590 0.68 +3.0
4,525,989 + CA264_19590 0.68 -0.9
4,526,205 - +0.1
4,526,214 + +0.9
4,526,227 + +0.4
4,526,240 + -0.8
4,526,250 + +0.4
4,526,251 - +0.1
4,526,251 - +2.4
4,526,267 - -0.4
4,526,267 - +0.8
4,526,271 - +0.1
4,526,271 - +1.0
4,526,279 + +0.1
4,526,280 - +0.3
4,526,280 - +0.7
4,526,293 - +0.2
4,526,299 + -0.2
4,526,301 + +1.0
4,526,304 + +0.0
4,526,304 + +0.3
4,526,306 + -1.1
4,526,311 + +0.6
4,526,404 - -0.1
4,526,458 + -0.9
4,526,458 + -1.6
4,526,458 + +0.4
4,526,465 + -2.9
4,526,466 - +0.1

Or see this region's nucleotide sequence