Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19080

Experiment: m.b. Spectinomycin 0.08 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19070 and CA264_19075 are separated by 4 nucleotidesCA264_19075 and CA264_19080 overlap by 65 nucleotidesCA264_19080 and CA264_19085 are separated by 508 nucleotides CA264_19070: CA264_19070 - DUF368 domain-containing protein, at 4,432,027 to 4,432,926 _19070 CA264_19075: CA264_19075 - shikimate dehydrogenase, at 4,432,931 to 4,433,671 _19075 CA264_19080: CA264_19080 - hypothetical protein, at 4,433,607 to 4,434,173 _19080 CA264_19085: CA264_19085 - RNA polymerase subunit sigma-24, at 4,434,682 to 4,435,260 _19085 Position (kb) 4433 4434 4435Strain fitness (log2 ratio) -1 0 1 2at 4432.923 kb on - strandat 4432.930 kb on + strandat 4432.930 kb on + strandat 4432.931 kb on - strandat 4433.700 kb on + strand, within CA264_19080at 4433.729 kb on + strand, within CA264_19080at 4433.729 kb on + strand, within CA264_19080at 4433.730 kb on - strand, within CA264_19080at 4433.737 kb on + strand, within CA264_19080at 4433.752 kb on - strand, within CA264_19080at 4433.752 kb on - strand, within CA264_19080at 4433.752 kb on - strand, within CA264_19080at 4433.788 kb on + strand, within CA264_19080at 4433.788 kb on + strand, within CA264_19080at 4433.789 kb on - strand, within CA264_19080at 4433.795 kb on + strand, within CA264_19080at 4433.832 kb on + strand, within CA264_19080at 4433.833 kb on - strand, within CA264_19080at 4433.841 kb on + strand, within CA264_19080at 4434.099 kb on + strand, within CA264_19080at 4434.099 kb on + strand, within CA264_19080at 4434.101 kb on + strand, within CA264_19080at 4434.101 kb on + strand, within CA264_19080at 4434.163 kb on + strandat 4434.163 kb on + strandat 4434.164 kb on - strandat 4434.169 kb on - strandat 4434.172 kb on - strandat 4434.172 kb on - strandat 4434.172 kb on - strandat 4434.175 kb on + strandat 4434.177 kb on + strandat 4434.177 kb on + strandat 4434.178 kb on - strandat 4434.178 kb on - strandat 4434.178 kb on - strandat 4434.200 kb on - strandat 4434.200 kb on - strandat 4434.210 kb on - strandat 4434.215 kb on + strandat 4434.216 kb on - strandat 4434.218 kb on + strandat 4434.218 kb on + strandat 4434.219 kb on - strandat 4434.290 kb on + strandat 4434.291 kb on - strandat 4434.293 kb on + strandat 4434.407 kb on - strandat 4434.438 kb on - strandat 4434.493 kb on + strandat 4434.605 kb on - strandat 4434.605 kb on - strandat 4434.615 kb on + strandat 4434.651 kb on + strandat 4434.726 kb on - strandat 4434.769 kb on + strand, within CA264_19085at 4434.769 kb on + strand, within CA264_19085at 4434.840 kb on + strand, within CA264_19085at 4434.944 kb on + strand, within CA264_19085at 4435.009 kb on - strand, within CA264_19085at 4435.056 kb on - strand, within CA264_19085at 4435.059 kb on + strand, within CA264_19085at 4435.106 kb on - strand, within CA264_19085

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.08 mg/ml
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4,432,923 - -1.6
4,432,930 + +0.3
4,432,930 + +0.4
4,432,931 - -1.1
4,433,700 + CA264_19080 0.16 -0.4
4,433,729 + CA264_19080 0.22 -0.7
4,433,729 + CA264_19080 0.22 -0.9
4,433,730 - CA264_19080 0.22 +0.5
4,433,737 + CA264_19080 0.23 +0.0
4,433,752 - CA264_19080 0.26 -0.4
4,433,752 - CA264_19080 0.26 -0.6
4,433,752 - CA264_19080 0.26 -0.2
4,433,788 + CA264_19080 0.32 -0.2
4,433,788 + CA264_19080 0.32 -0.3
4,433,789 - CA264_19080 0.32 +1.4
4,433,795 + CA264_19080 0.33 -0.2
4,433,832 + CA264_19080 0.40 -0.8
4,433,833 - CA264_19080 0.40 +1.0
4,433,841 + CA264_19080 0.41 -0.9
4,434,099 + CA264_19080 0.87 +0.1
4,434,099 + CA264_19080 0.87 -1.2
4,434,101 + CA264_19080 0.87 +0.4
4,434,101 + CA264_19080 0.87 +0.6
4,434,163 + -0.7
4,434,163 + +2.2
4,434,164 - -0.6
4,434,169 - +0.8
4,434,172 - +0.5
4,434,172 - -0.7
4,434,172 - +0.6
4,434,175 + -1.2
4,434,177 + -0.1
4,434,177 + -0.3
4,434,178 - +0.5
4,434,178 - +0.3
4,434,178 - +1.4
4,434,200 - -0.3
4,434,200 - +0.8
4,434,210 - +0.3
4,434,215 + -0.4
4,434,216 - +0.5
4,434,218 + +0.2
4,434,218 + -0.2
4,434,219 - +0.1
4,434,290 + -0.3
4,434,291 - -1.4
4,434,293 + +0.8
4,434,407 - -0.9
4,434,438 - -0.1
4,434,493 + -0.8
4,434,605 - -1.4
4,434,605 - +0.4
4,434,615 + +0.2
4,434,651 + -0.0
4,434,726 - +0.1
4,434,769 + CA264_19085 0.15 -0.7
4,434,769 + CA264_19085 0.15 +0.1
4,434,840 + CA264_19085 0.27 +1.1
4,434,944 + CA264_19085 0.45 -0.3
4,435,009 - CA264_19085 0.56 -0.5
4,435,056 - CA264_19085 0.65 +1.9
4,435,059 + CA264_19085 0.65 -0.4
4,435,106 - CA264_19085 0.73 +1.1

Or see this region's nucleotide sequence