Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19045

Experiment: m.b. Spectinomycin 0.08 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19035 and CA264_19040 are separated by 71 nucleotidesCA264_19040 and CA264_19045 are separated by 149 nucleotidesCA264_19045 and CA264_19050 are separated by 243 nucleotides CA264_19035: CA264_19035 - integrase, at 4,425,163 to 4,426,041 _19035 CA264_19040: CA264_19040 - 30S ribosomal protein S21, at 4,426,113 to 4,426,307 _19040 CA264_19045: CA264_19045 - acyl-CoA dehydrogenase, at 4,426,457 to 4,427,596 _19045 CA264_19050: CA264_19050 - capsular biosynthesis protein, at 4,427,840 to 4,428,592 _19050 Position (kb) 4426 4427 4428Strain fitness (log2 ratio) -3 -2 -1 0 1at 4426.112 kb on - strandat 4426.112 kb on - strandat 4426.115 kb on - strandat 4426.458 kb on + strandat 4426.480 kb on + strandat 4426.481 kb on - strandat 4426.493 kb on + strandat 4426.540 kb on - strandat 4426.543 kb on - strandat 4426.543 kb on - strandat 4426.699 kb on - strand, within CA264_19045at 4426.703 kb on - strand, within CA264_19045at 4426.867 kb on + strand, within CA264_19045at 4427.042 kb on + strand, within CA264_19045at 4427.096 kb on + strand, within CA264_19045at 4427.155 kb on - strand, within CA264_19045at 4427.304 kb on - strand, within CA264_19045at 4427.339 kb on - strand, within CA264_19045at 4427.391 kb on + strand, within CA264_19045at 4427.700 kb on - strandat 4427.703 kb on + strandat 4427.703 kb on + strandat 4427.749 kb on + strandat 4427.767 kb on + strandat 4427.833 kb on - strandat 4427.844 kb on + strandat 4427.844 kb on + strandat 4427.845 kb on - strandat 4427.845 kb on - strandat 4428.590 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.08 mg/ml
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4,426,112 - -0.5
4,426,112 - -0.4
4,426,115 - -0.2
4,426,458 + +0.7
4,426,480 + +0.6
4,426,481 - -0.5
4,426,493 + +0.4
4,426,540 - +0.4
4,426,543 - -0.5
4,426,543 - -0.0
4,426,699 - CA264_19045 0.21 +0.1
4,426,703 - CA264_19045 0.22 -0.9
4,426,867 + CA264_19045 0.36 -0.3
4,427,042 + CA264_19045 0.51 -0.5
4,427,096 + CA264_19045 0.56 +0.5
4,427,155 - CA264_19045 0.61 -0.2
4,427,304 - CA264_19045 0.74 -0.2
4,427,339 - CA264_19045 0.77 +1.2
4,427,391 + CA264_19045 0.82 +0.8
4,427,700 - -0.2
4,427,703 + +0.4
4,427,703 + -0.9
4,427,749 + -1.8
4,427,767 + +1.4
4,427,833 - -0.1
4,427,844 + -3.5
4,427,844 + -2.4
4,427,845 - -0.7
4,427,845 - +1.0
4,428,590 + +1.4

Or see this region's nucleotide sequence