Experiment: m.b. Spectinomycin 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_18545 and CA264_18550 are separated by 321 nucleotides CA264_18550 and CA264_18555 are separated by 81 nucleotides CA264_18555 and CA264_18560 are separated by 202 nucleotides
CA264_18545: CA264_18545 - DNA mismatch repair protein MutS, at 4,314,652 to 4,317,285
_18545
CA264_18550: CA264_18550 - tRNA-Gly, at 4,317,607 to 4,317,679
_18550
CA264_18555: CA264_18555 - tRNA-Leu, at 4,317,761 to 4,317,844
_18555
CA264_18560: CA264_18560 - hypothetical protein, at 4,318,047 to 4,319,141
_18560
Position (kb) 4317
4318 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4316.770 kb on + strand, within CA264_18545 at 4316.827 kb on + strand, within CA264_18545 at 4316.828 kb on - strand, within CA264_18545 at 4316.828 kb on - strand, within CA264_18545 at 4316.857 kb on + strand, within CA264_18545 at 4316.858 kb on - strand, within CA264_18545 at 4316.905 kb on + strand, within CA264_18545 at 4316.905 kb on + strand, within CA264_18545 at 4316.905 kb on + strand, within CA264_18545 at 4316.906 kb on - strand, within CA264_18545 at 4316.906 kb on - strand, within CA264_18545 at 4316.991 kb on - strand, within CA264_18545 at 4316.991 kb on - strand, within CA264_18545 at 4316.991 kb on - strand, within CA264_18545 at 4316.991 kb on - strand, within CA264_18545 at 4317.415 kb on - strand at 4317.415 kb on - strand at 4317.872 kb on + strand at 4317.984 kb on - strand at 4318.117 kb on + strand at 4318.118 kb on - strand at 4318.123 kb on + strand at 4318.124 kb on - strand at 4318.126 kb on - strand at 4318.130 kb on - strand at 4318.137 kb on + strand at 4318.138 kb on - strand at 4318.141 kb on - strand at 4318.168 kb on + strand, within CA264_18560 at 4318.217 kb on + strand, within CA264_18560 at 4318.217 kb on + strand, within CA264_18560 at 4318.218 kb on - strand, within CA264_18560 at 4318.218 kb on - strand, within CA264_18560 at 4318.318 kb on + strand, within CA264_18560 at 4318.319 kb on - strand, within CA264_18560 at 4318.332 kb on + strand, within CA264_18560 at 4318.332 kb on + strand, within CA264_18560 at 4318.335 kb on + strand, within CA264_18560 at 4318.336 kb on - strand at 4318.378 kb on + strand, within CA264_18560 at 4318.379 kb on - strand, within CA264_18560 at 4318.393 kb on + strand, within CA264_18560 at 4318.431 kb on - strand, within CA264_18560 at 4318.457 kb on + strand, within CA264_18560 at 4318.474 kb on + strand, within CA264_18560 at 4318.500 kb on - strand, within CA264_18560 at 4318.500 kb on - strand, within CA264_18560 at 4318.542 kb on - strand, within CA264_18560 at 4318.563 kb on - strand, within CA264_18560 at 4318.576 kb on + strand, within CA264_18560 at 4318.642 kb on + strand, within CA264_18560 at 4318.649 kb on - strand, within CA264_18560 at 4318.748 kb on + strand, within CA264_18560 at 4318.749 kb on - strand, within CA264_18560 at 4318.769 kb on + strand, within CA264_18560 at 4318.769 kb on + strand, within CA264_18560 at 4318.771 kb on + strand, within CA264_18560 at 4318.771 kb on + strand, within CA264_18560 at 4318.827 kb on - strand, within CA264_18560
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.08 mg/ml remove 4,316,770 + CA264_18545 0.80 -0.9 4,316,827 + CA264_18545 0.83 -1.5 4,316,828 - CA264_18545 0.83 +0.7 4,316,828 - CA264_18545 0.83 -0.0 4,316,857 + CA264_18545 0.84 +0.0 4,316,858 - CA264_18545 0.84 +3.8 4,316,905 + CA264_18545 0.86 -2.0 4,316,905 + CA264_18545 0.86 -0.7 4,316,905 + CA264_18545 0.86 -0.2 4,316,906 - CA264_18545 0.86 +1.5 4,316,906 - CA264_18545 0.86 -1.0 4,316,991 - CA264_18545 0.89 -0.8 4,316,991 - CA264_18545 0.89 -0.7 4,316,991 - CA264_18545 0.89 +0.7 4,316,991 - CA264_18545 0.89 +0.5 4,317,415 - -0.4 4,317,415 - +0.4 4,317,872 + -0.6 4,317,984 - -0.4 4,318,117 + +1.2 4,318,118 - -1.1 4,318,123 + +0.8 4,318,124 - -0.6 4,318,126 - +0.7 4,318,130 - +0.1 4,318,137 + +1.5 4,318,138 - +0.7 4,318,141 - +0.4 4,318,168 + CA264_18560 0.11 -0.8 4,318,217 + CA264_18560 0.16 +2.1 4,318,217 + CA264_18560 0.16 +0.2 4,318,218 - CA264_18560 0.16 -0.2 4,318,218 - CA264_18560 0.16 +0.4 4,318,318 + CA264_18560 0.25 +0.1 4,318,319 - CA264_18560 0.25 +0.8 4,318,332 + CA264_18560 0.26 -0.6 4,318,332 + CA264_18560 0.26 -0.2 4,318,335 + CA264_18560 0.26 +1.5 4,318,336 - -0.0 4,318,378 + CA264_18560 0.30 +0.2 4,318,379 - CA264_18560 0.30 +0.0 4,318,393 + CA264_18560 0.32 +0.5 4,318,431 - CA264_18560 0.35 +0.4 4,318,457 + CA264_18560 0.37 -0.5 4,318,474 + CA264_18560 0.39 -0.0 4,318,500 - CA264_18560 0.41 -0.2 4,318,500 - CA264_18560 0.41 -0.7 4,318,542 - CA264_18560 0.45 +1.4 4,318,563 - CA264_18560 0.47 +0.5 4,318,576 + CA264_18560 0.48 +0.3 4,318,642 + CA264_18560 0.54 +1.5 4,318,649 - CA264_18560 0.55 +0.8 4,318,748 + CA264_18560 0.64 +0.3 4,318,749 - CA264_18560 0.64 +0.4 4,318,769 + CA264_18560 0.66 -0.5 4,318,769 + CA264_18560 0.66 +0.3 4,318,771 + CA264_18560 0.66 +0.0 4,318,771 + CA264_18560 0.66 +0.1 4,318,827 - CA264_18560 0.71 -1.2
Or see this region's nucleotide sequence