Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17985

Experiment: m.b. Spectinomycin 0.08 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17980 and CA264_17985 are separated by 103 nucleotidesCA264_17985 and CA264_17990 are separated by 19 nucleotides CA264_17980: CA264_17980 - chloride channel protein, at 4,180,348 to 4,181,619 _17980 CA264_17985: CA264_17985 - hypothetical protein, at 4,181,723 to 4,182,196 _17985 CA264_17990: CA264_17990 - nitric oxide dioxygenase, at 4,182,216 to 4,183,427 _17990 Position (kb) 4181 4182 4183Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4180.767 kb on + strand, within CA264_17980at 4180.767 kb on + strand, within CA264_17980at 4180.767 kb on + strand, within CA264_17980at 4180.767 kb on + strand, within CA264_17980at 4180.802 kb on - strand, within CA264_17980at 4180.805 kb on + strand, within CA264_17980at 4180.896 kb on - strand, within CA264_17980at 4180.937 kb on + strand, within CA264_17980at 4180.937 kb on + strand, within CA264_17980at 4180.938 kb on - strand, within CA264_17980at 4180.938 kb on - strand, within CA264_17980at 4180.971 kb on + strand, within CA264_17980at 4180.972 kb on - strand, within CA264_17980at 4180.993 kb on - strand, within CA264_17980at 4181.058 kb on + strand, within CA264_17980at 4181.058 kb on + strand, within CA264_17980at 4181.068 kb on + strand, within CA264_17980at 4181.068 kb on + strand, within CA264_17980at 4181.068 kb on + strand, within CA264_17980at 4181.069 kb on - strand, within CA264_17980at 4181.069 kb on - strand, within CA264_17980at 4181.141 kb on - strand, within CA264_17980at 4181.141 kb on - strand, within CA264_17980at 4181.146 kb on + strand, within CA264_17980at 4181.156 kb on - strand, within CA264_17980at 4181.292 kb on + strand, within CA264_17980at 4181.332 kb on - strand, within CA264_17980at 4181.332 kb on - strand, within CA264_17980at 4181.389 kb on + strand, within CA264_17980at 4181.401 kb on + strand, within CA264_17980at 4181.423 kb on + strand, within CA264_17980at 4181.423 kb on + strand, within CA264_17980at 4181.424 kb on - strand, within CA264_17980at 4181.424 kb on - strand, within CA264_17980at 4181.610 kb on + strandat 4181.641 kb on - strandat 4181.648 kb on + strandat 4181.649 kb on - strandat 4181.675 kb on + strandat 4181.732 kb on + strandat 4181.733 kb on - strandat 4181.733 kb on - strandat 4181.856 kb on + strand, within CA264_17985at 4181.901 kb on - strand, within CA264_17985at 4181.909 kb on + strand, within CA264_17985at 4181.910 kb on - strand, within CA264_17985at 4181.912 kb on - strand, within CA264_17985at 4181.935 kb on + strand, within CA264_17985at 4181.935 kb on + strand, within CA264_17985at 4181.967 kb on - strand, within CA264_17985at 4182.041 kb on - strand, within CA264_17985at 4182.127 kb on + strand, within CA264_17985at 4182.128 kb on - strand, within CA264_17985at 4182.128 kb on - strand, within CA264_17985at 4182.149 kb on - strandat 4182.149 kb on - strandat 4182.150 kb on + strandat 4182.150 kb on + strandat 4182.151 kb on - strandat 4182.151 kb on - strandat 4182.151 kb on - strandat 4182.173 kb on - strandat 4182.196 kb on + strandat 4182.217 kb on + strandat 4182.254 kb on - strandat 4182.334 kb on + strandat 4182.351 kb on + strand, within CA264_17990at 4182.385 kb on - strand, within CA264_17990at 4182.385 kb on - strand, within CA264_17990at 4182.397 kb on + strand, within CA264_17990at 4182.397 kb on + strand, within CA264_17990at 4182.397 kb on + strand, within CA264_17990at 4182.436 kb on + strand, within CA264_17990at 4182.454 kb on - strand, within CA264_17990at 4182.505 kb on - strand, within CA264_17990at 4182.528 kb on + strand, within CA264_17990at 4182.529 kb on - strand, within CA264_17990at 4182.619 kb on - strand, within CA264_17990at 4182.649 kb on - strand, within CA264_17990at 4182.678 kb on + strand, within CA264_17990at 4182.678 kb on + strand, within CA264_17990at 4182.778 kb on + strand, within CA264_17990at 4182.808 kb on + strand, within CA264_17990at 4182.831 kb on + strand, within CA264_17990at 4182.858 kb on + strand, within CA264_17990at 4182.858 kb on + strand, within CA264_17990at 4182.858 kb on + strand, within CA264_17990at 4182.859 kb on - strand, within CA264_17990at 4182.862 kb on + strand, within CA264_17990at 4182.913 kb on + strand, within CA264_17990at 4182.924 kb on - strand, within CA264_17990at 4183.045 kb on - strand, within CA264_17990at 4183.074 kb on + strand, within CA264_17990at 4183.105 kb on - strand, within CA264_17990at 4183.138 kb on - strand, within CA264_17990at 4183.142 kb on + strand, within CA264_17990at 4183.142 kb on + strand, within CA264_17990at 4183.148 kb on - strand, within CA264_17990at 4183.148 kb on - strand, within CA264_17990

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.08 mg/ml
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4,180,767 + CA264_17980 0.33 -0.2
4,180,767 + CA264_17980 0.33 -0.1
4,180,767 + CA264_17980 0.33 +0.4
4,180,767 + CA264_17980 0.33 -0.4
4,180,802 - CA264_17980 0.36 -2.4
4,180,805 + CA264_17980 0.36 -0.0
4,180,896 - CA264_17980 0.43 -0.2
4,180,937 + CA264_17980 0.46 -0.8
4,180,937 + CA264_17980 0.46 +0.4
4,180,938 - CA264_17980 0.46 -1.4
4,180,938 - CA264_17980 0.46 +0.1
4,180,971 + CA264_17980 0.49 -0.0
4,180,972 - CA264_17980 0.49 +2.3
4,180,993 - CA264_17980 0.51 -0.6
4,181,058 + CA264_17980 0.56 +3.1
4,181,058 + CA264_17980 0.56 +0.1
4,181,068 + CA264_17980 0.57 +0.5
4,181,068 + CA264_17980 0.57 -0.2
4,181,068 + CA264_17980 0.57 -0.3
4,181,069 - CA264_17980 0.57 +0.2
4,181,069 - CA264_17980 0.57 -0.0
4,181,141 - CA264_17980 0.62 +0.5
4,181,141 - CA264_17980 0.62 +1.9
4,181,146 + CA264_17980 0.63 +0.3
4,181,156 - CA264_17980 0.64 +0.3
4,181,292 + CA264_17980 0.74 -0.1
4,181,332 - CA264_17980 0.77 +0.1
4,181,332 - CA264_17980 0.77 +0.3
4,181,389 + CA264_17980 0.82 +1.5
4,181,401 + CA264_17980 0.83 -0.5
4,181,423 + CA264_17980 0.85 +0.5
4,181,423 + CA264_17980 0.85 -0.2
4,181,424 - CA264_17980 0.85 +0.2
4,181,424 - CA264_17980 0.85 +1.1
4,181,610 + +2.5
4,181,641 - +1.7
4,181,648 + +0.3
4,181,649 - +0.6
4,181,675 + -0.3
4,181,732 + +1.9
4,181,733 - +1.1
4,181,733 - +0.8
4,181,856 + CA264_17985 0.28 -1.5
4,181,901 - CA264_17985 0.38 +0.8
4,181,909 + CA264_17985 0.39 +1.3
4,181,910 - CA264_17985 0.39 -0.2
4,181,912 - CA264_17985 0.40 -0.0
4,181,935 + CA264_17985 0.45 -2.3
4,181,935 + CA264_17985 0.45 -0.2
4,181,967 - CA264_17985 0.51 -0.0
4,182,041 - CA264_17985 0.67 +1.0
4,182,127 + CA264_17985 0.85 +0.8
4,182,128 - CA264_17985 0.85 -0.1
4,182,128 - CA264_17985 0.85 +1.0
4,182,149 - +0.2
4,182,149 - -0.3
4,182,150 + +0.8
4,182,150 + +0.2
4,182,151 - +1.0
4,182,151 - +0.8
4,182,151 - +0.4
4,182,173 - +1.0
4,182,196 + -0.3
4,182,217 + +0.4
4,182,254 - -0.9
4,182,334 + -0.5
4,182,351 + CA264_17990 0.11 -0.4
4,182,385 - CA264_17990 0.14 +0.1
4,182,385 - CA264_17990 0.14 -0.3
4,182,397 + CA264_17990 0.15 -0.5
4,182,397 + CA264_17990 0.15 +0.3
4,182,397 + CA264_17990 0.15 -0.1
4,182,436 + CA264_17990 0.18 -0.9
4,182,454 - CA264_17990 0.20 +1.5
4,182,505 - CA264_17990 0.24 -0.5
4,182,528 + CA264_17990 0.26 -0.0
4,182,529 - CA264_17990 0.26 -0.5
4,182,619 - CA264_17990 0.33 -0.5
4,182,649 - CA264_17990 0.36 -0.4
4,182,678 + CA264_17990 0.38 +0.6
4,182,678 + CA264_17990 0.38 -0.5
4,182,778 + CA264_17990 0.46 -0.0
4,182,808 + CA264_17990 0.49 -0.3
4,182,831 + CA264_17990 0.51 +1.1
4,182,858 + CA264_17990 0.53 +0.1
4,182,858 + CA264_17990 0.53 -0.3
4,182,858 + CA264_17990 0.53 +0.2
4,182,859 - CA264_17990 0.53 -0.3
4,182,862 + CA264_17990 0.53 -0.4
4,182,913 + CA264_17990 0.58 -0.6
4,182,924 - CA264_17990 0.58 -0.5
4,183,045 - CA264_17990 0.68 +0.3
4,183,074 + CA264_17990 0.71 -0.0
4,183,105 - CA264_17990 0.73 +1.5
4,183,138 - CA264_17990 0.76 +0.3
4,183,142 + CA264_17990 0.76 -0.6
4,183,142 + CA264_17990 0.76 -0.5
4,183,148 - CA264_17990 0.77 -1.0
4,183,148 - CA264_17990 0.77 -0.6

Or see this region's nucleotide sequence