Experiment: m.b. Spectinomycin 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_17910 and CA264_17915 are separated by 23 nucleotides CA264_17915 and CA264_17920 are separated by 21 nucleotides CA264_17920 and CA264_17925 are separated by 62 nucleotides
CA264_17910: CA264_17910 - dTDP-glucose 4,6-dehydratase, at 4,163,688 to 4,164,737
_17910
CA264_17915: CA264_17915 - LPS biosynthesis protein WbpP, at 4,164,761 to 4,165,786
_17915
CA264_17920: CA264_17920 - glucose-1-phosphate thymidylyltransferase, at 4,165,808 to 4,166,668
_17920
CA264_17925: CA264_17925 - chromate transporter, at 4,166,731 to 4,167,903
_17925
Position (kb)
4164
4165
4166 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4164.685 kb on + strand at 4164.709 kb on - strand at 4164.725 kb on + strand at 4164.758 kb on + strand at 4164.759 kb on - strand at 4164.760 kb on + strand at 4164.760 kb on + strand at 4164.869 kb on - strand, within CA264_17915 at 4164.923 kb on - strand, within CA264_17915 at 4164.991 kb on + strand, within CA264_17915 at 4165.079 kb on - strand, within CA264_17915 at 4165.262 kb on + strand, within CA264_17915 at 4165.520 kb on + strand, within CA264_17915 at 4165.698 kb on + strand at 4165.751 kb on - strand at 4165.785 kb on - strand at 4165.787 kb on + strand at 4165.804 kb on - strand at 4165.804 kb on - strand at 4165.805 kb on + strand at 4166.675 kb on - strand at 4166.678 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.08 mg/ml remove 4,164,685 + +0.2 4,164,709 - +0.6 4,164,725 + -0.7 4,164,758 + -1.8 4,164,759 - -1.4 4,164,760 + +0.7 4,164,760 + +0.6 4,164,869 - CA264_17915 0.11 -2.9 4,164,923 - CA264_17915 0.16 -1.9 4,164,991 + CA264_17915 0.22 -1.0 4,165,079 - CA264_17915 0.31 -1.4 4,165,262 + CA264_17915 0.49 -3.0 4,165,520 + CA264_17915 0.74 -1.2 4,165,698 + -2.4 4,165,751 - -1.3 4,165,785 - -1.0 4,165,787 + -0.1 4,165,804 - -0.8 4,165,804 - -0.2 4,165,805 + -1.2 4,166,675 - -0.2 4,166,678 - +1.0
Or see this region's nucleotide sequence