Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15170
Experiment: m.b. Spectinomycin 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. Spectinomycin 0.08 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,555,230 | - | +1.5 | |||
3,555,325 | + | +0.5 | |||
3,555,331 | - | +2.0 | |||
3,555,352 | - | +1.3 | |||
3,555,407 | - | CA264_15165 | 0.13 | +2.1 | |
3,555,482 | + | CA264_15165 | 0.22 | +2.3 | |
3,555,622 | + | CA264_15165 | 0.38 | +2.3 | |
3,555,623 | - | CA264_15165 | 0.38 | +2.5 | |
3,555,623 | - | CA264_15165 | 0.38 | +1.5 | |
3,555,857 | - | CA264_15165 | 0.65 | +0.7 | |
3,555,865 | + | CA264_15165 | 0.66 | -0.1 | |
3,555,904 | + | CA264_15165 | 0.71 | +0.4 | |
3,555,904 | + | CA264_15165 | 0.71 | +0.5 | |
3,555,910 | + | CA264_15165 | 0.72 | +1.3 | |
3,556,241 | + | CA264_15170 | 0.10 | -0.9 | |
3,556,266 | + | CA264_15170 | 0.14 | +0.6 | |
3,556,305 | - | CA264_15170 | 0.21 | +0.3 | |
3,556,311 | + | CA264_15170 | 0.22 | -0.1 | |
3,556,312 | - | CA264_15170 | 0.22 | +1.3 | |
3,556,380 | + | CA264_15170 | 0.33 | +3.3 | |
3,556,427 | + | CA264_15170 | 0.41 | -0.4 | |
3,556,597 | - | CA264_15170 | 0.69 | +1.1 | |
3,556,626 | - | CA264_15170 | 0.74 | +0.3 | |
3,556,783 | + | +0.7 | |||
3,556,784 | - | +2.8 | |||
3,556,804 | - | +0.6 | |||
3,557,069 | + | CA264_15175 | 0.50 | +0.7 | |
3,557,235 | + | CA264_15175 | 0.82 | +0.4 | |
3,557,344 | + | -0.5 | |||
3,557,408 | + | -0.7 | |||
3,557,660 | - | CA264_15180 | 0.39 | -0.3 |
Or see this region's nucleotide sequence