Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15165

Experiment: m.b. Spectinomycin 0.08 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15160 and CA264_15165 are separated by 514 nucleotidesCA264_15165 and CA264_15170 are separated by 23 nucleotidesCA264_15170 and CA264_15175 are separated by 19 nucleotides CA264_15160: CA264_15160 - nucleoside triphosphate pyrophosphohydrolase, at 3,553,966 to 3,554,775 _15160 CA264_15165: CA264_15165 - flagellar motor protein MotA, at 3,555,290 to 3,556,156 _15165 CA264_15170: CA264_15170 - biopolymer transporter ExbD, at 3,556,180 to 3,556,785 _15170 CA264_15175: CA264_15175 - biopolymer transporter ExbD, at 3,556,805 to 3,557,329 _15175 Position (kb) 3555 3556 3557Strain fitness (log2 ratio) -1 0 1 2 3 4at 3554.415 kb on - strand, within CA264_15160at 3554.430 kb on - strand, within CA264_15160at 3554.505 kb on - strand, within CA264_15160at 3554.505 kb on - strand, within CA264_15160at 3554.526 kb on + strand, within CA264_15160at 3554.527 kb on - strand, within CA264_15160at 3554.531 kb on + strand, within CA264_15160at 3554.790 kb on + strandat 3554.808 kb on - strandat 3554.864 kb on + strandat 3554.869 kb on + strandat 3554.936 kb on - strandat 3554.942 kb on + strandat 3555.021 kb on + strandat 3555.059 kb on + strandat 3555.060 kb on - strandat 3555.112 kb on + strandat 3555.152 kb on + strandat 3555.157 kb on + strandat 3555.158 kb on - strandat 3555.158 kb on - strandat 3555.160 kb on + strandat 3555.230 kb on - strandat 3555.325 kb on + strandat 3555.331 kb on - strandat 3555.352 kb on - strandat 3555.407 kb on - strand, within CA264_15165at 3555.482 kb on + strand, within CA264_15165at 3555.622 kb on + strand, within CA264_15165at 3555.623 kb on - strand, within CA264_15165at 3555.623 kb on - strand, within CA264_15165at 3555.857 kb on - strand, within CA264_15165at 3555.865 kb on + strand, within CA264_15165at 3555.904 kb on + strand, within CA264_15165at 3555.904 kb on + strand, within CA264_15165at 3555.910 kb on + strand, within CA264_15165at 3556.241 kb on + strand, within CA264_15170at 3556.266 kb on + strand, within CA264_15170at 3556.305 kb on - strand, within CA264_15170at 3556.311 kb on + strand, within CA264_15170at 3556.312 kb on - strand, within CA264_15170at 3556.380 kb on + strand, within CA264_15170at 3556.427 kb on + strand, within CA264_15170at 3556.597 kb on - strand, within CA264_15170at 3556.626 kb on - strand, within CA264_15170at 3556.783 kb on + strandat 3556.784 kb on - strandat 3556.804 kb on - strandat 3557.069 kb on + strand, within CA264_15175

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.08 mg/ml
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3,554,415 - CA264_15160 0.55 +2.4
3,554,430 - CA264_15160 0.57 +1.9
3,554,505 - CA264_15160 0.67 +3.4
3,554,505 - CA264_15160 0.67 +2.0
3,554,526 + CA264_15160 0.69 -0.3
3,554,527 - CA264_15160 0.69 +4.0
3,554,531 + CA264_15160 0.70 -1.4
3,554,790 + +0.3
3,554,808 - +1.3
3,554,864 + +0.4
3,554,869 + -1.6
3,554,936 - +3.3
3,554,942 + -0.4
3,555,021 + +1.3
3,555,059 + -0.7
3,555,060 - +2.1
3,555,112 + +1.3
3,555,152 + -1.1
3,555,157 + -1.3
3,555,158 - +1.8
3,555,158 - +1.3
3,555,160 + +0.5
3,555,230 - +1.5
3,555,325 + +0.5
3,555,331 - +2.0
3,555,352 - +1.3
3,555,407 - CA264_15165 0.13 +2.1
3,555,482 + CA264_15165 0.22 +2.3
3,555,622 + CA264_15165 0.38 +2.3
3,555,623 - CA264_15165 0.38 +2.5
3,555,623 - CA264_15165 0.38 +1.5
3,555,857 - CA264_15165 0.65 +0.7
3,555,865 + CA264_15165 0.66 -0.1
3,555,904 + CA264_15165 0.71 +0.4
3,555,904 + CA264_15165 0.71 +0.5
3,555,910 + CA264_15165 0.72 +1.3
3,556,241 + CA264_15170 0.10 -0.9
3,556,266 + CA264_15170 0.14 +0.6
3,556,305 - CA264_15170 0.21 +0.3
3,556,311 + CA264_15170 0.22 -0.1
3,556,312 - CA264_15170 0.22 +1.3
3,556,380 + CA264_15170 0.33 +3.3
3,556,427 + CA264_15170 0.41 -0.4
3,556,597 - CA264_15170 0.69 +1.1
3,556,626 - CA264_15170 0.74 +0.3
3,556,783 + +0.7
3,556,784 - +2.8
3,556,804 - +0.6
3,557,069 + CA264_15175 0.50 +0.7

Or see this region's nucleotide sequence