Experiment: m.b. Spectinomycin 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_14045 and CA264_14050 are separated by 42 nucleotides CA264_14050 and CA264_14055 are separated by 294 nucleotides
CA264_14045: CA264_14045 - hypothetical protein, at 3,289,581 to 3,290,990
_14045
CA264_14050: CA264_14050 - hypothetical protein, at 3,291,033 to 3,293,399
_14050
CA264_14055: CA264_14055 - sigma-54-dependent Fis family transcriptional regulator, at 3,293,694 to 3,295,061
_14055
Position (kb)
3291
3292
3293
3294 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3290.057 kb on + strand, within CA264_14045 at 3290.092 kb on - strand, within CA264_14045 at 3290.108 kb on + strand, within CA264_14045 at 3290.109 kb on - strand, within CA264_14045 at 3290.117 kb on - strand, within CA264_14045 at 3290.135 kb on + strand, within CA264_14045 at 3290.189 kb on - strand, within CA264_14045 at 3290.207 kb on + strand, within CA264_14045 at 3290.210 kb on - strand, within CA264_14045 at 3290.212 kb on + strand, within CA264_14045 at 3290.286 kb on + strand, within CA264_14045 at 3290.286 kb on + strand, within CA264_14045 at 3290.287 kb on - strand, within CA264_14045 at 3290.287 kb on - strand, within CA264_14045 at 3290.287 kb on - strand, within CA264_14045 at 3290.287 kb on - strand, within CA264_14045 at 3290.395 kb on + strand, within CA264_14045 at 3290.398 kb on + strand, within CA264_14045 at 3290.399 kb on - strand, within CA264_14045 at 3290.408 kb on - strand, within CA264_14045 at 3290.473 kb on + strand, within CA264_14045 at 3290.503 kb on + strand, within CA264_14045 at 3290.507 kb on - strand, within CA264_14045 at 3290.523 kb on + strand, within CA264_14045 at 3290.523 kb on + strand, within CA264_14045 at 3290.548 kb on - strand, within CA264_14045 at 3290.632 kb on + strand, within CA264_14045 at 3290.632 kb on + strand, within CA264_14045 at 3290.632 kb on + strand, within CA264_14045 at 3290.632 kb on + strand, within CA264_14045 at 3290.632 kb on + strand, within CA264_14045 at 3290.633 kb on - strand, within CA264_14045 at 3290.633 kb on - strand, within CA264_14045 at 3290.633 kb on - strand, within CA264_14045 at 3290.711 kb on - strand, within CA264_14045 at 3290.871 kb on + strand at 3290.871 kb on + strand at 3290.872 kb on - strand at 3290.875 kb on + strand at 3290.875 kb on + strand at 3290.876 kb on - strand at 3290.876 kb on - strand at 3290.879 kb on + strand at 3290.880 kb on - strand at 3290.880 kb on - strand at 3290.928 kb on + strand at 3290.928 kb on + strand at 3290.929 kb on - strand at 3290.929 kb on - strand at 3290.951 kb on + strand at 3290.975 kb on + strand at 3291.014 kb on + strand at 3291.154 kb on - strand at 3291.195 kb on - strand at 3291.195 kb on - strand at 3291.200 kb on - strand at 3291.268 kb on + strand at 3291.269 kb on - strand at 3291.297 kb on + strand, within CA264_14050 at 3291.298 kb on - strand, within CA264_14050 at 3291.343 kb on - strand, within CA264_14050 at 3291.374 kb on + strand, within CA264_14050 at 3291.397 kb on + strand, within CA264_14050 at 3291.434 kb on - strand, within CA264_14050 at 3291.466 kb on + strand, within CA264_14050 at 3291.568 kb on - strand, within CA264_14050 at 3291.648 kb on + strand, within CA264_14050 at 3291.649 kb on - strand, within CA264_14050 at 3291.678 kb on - strand, within CA264_14050 at 3291.691 kb on - strand, within CA264_14050 at 3291.832 kb on - strand, within CA264_14050 at 3291.979 kb on + strand, within CA264_14050 at 3292.002 kb on + strand, within CA264_14050 at 3292.002 kb on + strand, within CA264_14050 at 3292.035 kb on - strand, within CA264_14050 at 3292.046 kb on + strand, within CA264_14050 at 3292.046 kb on + strand, within CA264_14050 at 3292.161 kb on + strand, within CA264_14050 at 3292.226 kb on + strand, within CA264_14050 at 3292.254 kb on + strand, within CA264_14050 at 3292.348 kb on - strand, within CA264_14050 at 3292.348 kb on - strand, within CA264_14050 at 3292.385 kb on + strand, within CA264_14050 at 3292.386 kb on - strand, within CA264_14050 at 3292.386 kb on - strand, within CA264_14050 at 3292.386 kb on - strand, within CA264_14050 at 3292.386 kb on - strand, within CA264_14050 at 3292.386 kb on - strand, within CA264_14050 at 3292.524 kb on + strand, within CA264_14050 at 3292.525 kb on - strand, within CA264_14050 at 3292.525 kb on - strand, within CA264_14050 at 3292.526 kb on + strand, within CA264_14050 at 3292.527 kb on - strand, within CA264_14050 at 3292.584 kb on - strand, within CA264_14050 at 3292.603 kb on + strand, within CA264_14050 at 3292.603 kb on + strand, within CA264_14050 at 3292.604 kb on - strand, within CA264_14050 at 3292.609 kb on + strand, within CA264_14050 at 3292.610 kb on - strand, within CA264_14050 at 3292.610 kb on - strand, within CA264_14050 at 3292.610 kb on - strand, within CA264_14050 at 3292.610 kb on - strand, within CA264_14050 at 3292.744 kb on + strand, within CA264_14050 at 3292.744 kb on + strand at 3292.810 kb on + strand, within CA264_14050 at 3292.811 kb on - strand, within CA264_14050 at 3292.811 kb on - strand, within CA264_14050 at 3292.861 kb on - strand, within CA264_14050 at 3292.866 kb on - strand, within CA264_14050 at 3292.867 kb on + strand, within CA264_14050 at 3292.868 kb on - strand, within CA264_14050 at 3292.868 kb on - strand, within CA264_14050 at 3292.889 kb on + strand, within CA264_14050 at 3292.923 kb on - strand, within CA264_14050 at 3292.923 kb on - strand, within CA264_14050 at 3293.042 kb on - strand, within CA264_14050 at 3293.083 kb on - strand, within CA264_14050 at 3293.083 kb on - strand, within CA264_14050 at 3293.182 kb on - strand at 3293.204 kb on - strand at 3293.260 kb on + strand at 3293.291 kb on + strand at 3293.296 kb on - strand at 3293.296 kb on - strand at 3293.296 kb on - strand at 3293.297 kb on + strand at 3293.297 kb on + strand at 3293.297 kb on + strand at 3293.297 kb on + strand at 3293.297 kb on + strand at 3293.301 kb on - strand at 3293.395 kb on - strand at 3293.395 kb on - strand at 3293.399 kb on + strand at 3293.399 kb on + strand at 3293.399 kb on + strand at 3293.400 kb on - strand at 3293.405 kb on + strand at 3293.443 kb on + strand at 3293.446 kb on - strand at 3293.704 kb on + strand at 3293.705 kb on - strand at 3293.858 kb on - strand, within CA264_14055 at 3293.874 kb on - strand, within CA264_14055 at 3293.951 kb on + strand, within CA264_14055 at 3293.952 kb on - strand, within CA264_14055 at 3293.953 kb on + strand, within CA264_14055 at 3293.953 kb on + strand, within CA264_14055 at 3294.044 kb on + strand, within CA264_14055 at 3294.044 kb on + strand, within CA264_14055 at 3294.045 kb on - strand, within CA264_14055 at 3294.045 kb on - strand, within CA264_14055 at 3294.077 kb on + strand, within CA264_14055 at 3294.098 kb on + strand, within CA264_14055 at 3294.136 kb on + strand, within CA264_14055 at 3294.136 kb on + strand, within CA264_14055 at 3294.137 kb on - strand, within CA264_14055 at 3294.137 kb on - strand, within CA264_14055 at 3294.214 kb on + strand, within CA264_14055 at 3294.214 kb on + strand, within CA264_14055 at 3294.214 kb on + strand, within CA264_14055 at 3294.215 kb on - strand, within CA264_14055 at 3294.215 kb on - strand, within CA264_14055 at 3294.302 kb on - strand, within CA264_14055 at 3294.328 kb on + strand, within CA264_14055 at 3294.368 kb on + strand, within CA264_14055
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.08 mg/ml remove 3,290,057 + CA264_14045 0.34 +0.7 3,290,092 - CA264_14045 0.36 +0.1 3,290,108 + CA264_14045 0.37 +1.2 3,290,109 - CA264_14045 0.37 +1.2 3,290,117 - CA264_14045 0.38 +0.4 3,290,135 + CA264_14045 0.39 -1.2 3,290,189 - CA264_14045 0.43 +0.4 3,290,207 + CA264_14045 0.44 -1.0 3,290,210 - CA264_14045 0.45 +0.7 3,290,212 + CA264_14045 0.45 -0.2 3,290,286 + CA264_14045 0.50 +0.6 3,290,286 + CA264_14045 0.50 -1.0 3,290,287 - CA264_14045 0.50 +0.4 3,290,287 - CA264_14045 0.50 -0.2 3,290,287 - CA264_14045 0.50 +0.4 3,290,287 - CA264_14045 0.50 +0.6 3,290,395 + CA264_14045 0.58 -0.3 3,290,398 + CA264_14045 0.58 -0.4 3,290,399 - CA264_14045 0.58 +0.4 3,290,408 - CA264_14045 0.59 +1.0 3,290,473 + CA264_14045 0.63 -0.2 3,290,503 + CA264_14045 0.65 +0.3 3,290,507 - CA264_14045 0.66 +1.2 3,290,523 + CA264_14045 0.67 -0.0 3,290,523 + CA264_14045 0.67 -0.2 3,290,548 - CA264_14045 0.69 +1.2 3,290,632 + CA264_14045 0.75 +0.2 3,290,632 + CA264_14045 0.75 +0.1 3,290,632 + CA264_14045 0.75 -0.4 3,290,632 + CA264_14045 0.75 -0.4 3,290,632 + CA264_14045 0.75 -0.3 3,290,633 - CA264_14045 0.75 -1.0 3,290,633 - CA264_14045 0.75 -1.2 3,290,633 - CA264_14045 0.75 +1.6 3,290,711 - CA264_14045 0.80 +1.1 3,290,871 + -0.6 3,290,871 + -0.5 3,290,872 - +2.2 3,290,875 + -0.0 3,290,875 + +0.2 3,290,876 - +1.2 3,290,876 - +0.0 3,290,879 + +0.8 3,290,880 - +0.3 3,290,880 - -0.0 3,290,928 + -2.2 3,290,928 + +2.2 3,290,929 - -0.2 3,290,929 - -0.2 3,290,951 + -0.7 3,290,975 + +0.7 3,291,014 + -0.5 3,291,154 - -0.5 3,291,195 - +0.4 3,291,195 - +0.2 3,291,200 - -0.3 3,291,268 + -0.0 3,291,269 - -1.0 3,291,297 + CA264_14050 0.11 +0.2 3,291,298 - CA264_14050 0.11 -0.9 3,291,343 - CA264_14050 0.13 +0.6 3,291,374 + CA264_14050 0.14 -2.4 3,291,397 + CA264_14050 0.15 +0.2 3,291,434 - CA264_14050 0.17 -0.2 3,291,466 + CA264_14050 0.18 -1.4 3,291,568 - CA264_14050 0.23 +2.0 3,291,648 + CA264_14050 0.26 -1.0 3,291,649 - CA264_14050 0.26 -1.4 3,291,678 - CA264_14050 0.27 -0.6 3,291,691 - CA264_14050 0.28 -1.7 3,291,832 - CA264_14050 0.34 -0.8 3,291,979 + CA264_14050 0.40 -1.0 3,292,002 + CA264_14050 0.41 -0.1 3,292,002 + CA264_14050 0.41 +0.9 3,292,035 - CA264_14050 0.42 -0.2 3,292,046 + CA264_14050 0.43 -0.3 3,292,046 + CA264_14050 0.43 +1.2 3,292,161 + CA264_14050 0.48 +0.2 3,292,226 + CA264_14050 0.50 +0.2 3,292,254 + CA264_14050 0.52 -0.9 3,292,348 - CA264_14050 0.56 +0.4 3,292,348 - CA264_14050 0.56 -0.7 3,292,385 + CA264_14050 0.57 -0.9 3,292,386 - CA264_14050 0.57 +0.1 3,292,386 - CA264_14050 0.57 -0.2 3,292,386 - CA264_14050 0.57 +0.5 3,292,386 - CA264_14050 0.57 +0.4 3,292,386 - CA264_14050 0.57 +0.6 3,292,524 + CA264_14050 0.63 +0.6 3,292,525 - CA264_14050 0.63 -0.4 3,292,525 - CA264_14050 0.63 -0.7 3,292,526 + CA264_14050 0.63 -0.6 3,292,527 - CA264_14050 0.63 -0.1 3,292,584 - CA264_14050 0.66 -1.6 3,292,603 + CA264_14050 0.66 +1.0 3,292,603 + CA264_14050 0.66 +0.4 3,292,604 - CA264_14050 0.66 -1.3 3,292,609 + CA264_14050 0.67 +1.1 3,292,610 - CA264_14050 0.67 +0.6 3,292,610 - CA264_14050 0.67 +1.2 3,292,610 - CA264_14050 0.67 +0.2 3,292,610 - CA264_14050 0.67 -1.4 3,292,744 + CA264_14050 0.72 +0.5 3,292,744 + +0.8 3,292,810 + CA264_14050 0.75 -0.6 3,292,811 - CA264_14050 0.75 +0.1 3,292,811 - CA264_14050 0.75 -0.1 3,292,861 - CA264_14050 0.77 -0.5 3,292,866 - CA264_14050 0.77 -0.2 3,292,867 + CA264_14050 0.77 -0.1 3,292,868 - CA264_14050 0.78 -1.4 3,292,868 - CA264_14050 0.78 +0.1 3,292,889 + CA264_14050 0.78 -0.4 3,292,923 - CA264_14050 0.80 +0.3 3,292,923 - CA264_14050 0.80 -1.1 3,293,042 - CA264_14050 0.85 -2.5 3,293,083 - CA264_14050 0.87 -0.7 3,293,083 - CA264_14050 0.87 +0.2 3,293,182 - +0.2 3,293,204 - +1.5 3,293,260 + +0.6 3,293,291 + +0.6 3,293,296 - -1.0 3,293,296 - -0.8 3,293,296 - -1.8 3,293,297 + +1.2 3,293,297 + +0.5 3,293,297 + -0.3 3,293,297 + +0.7 3,293,297 + -0.2 3,293,301 - -0.8 3,293,395 - +0.6 3,293,395 - +0.7 3,293,399 + +0.5 3,293,399 + +0.7 3,293,399 + -0.9 3,293,400 - +0.2 3,293,405 + +0.4 3,293,443 + -0.6 3,293,446 - -0.5 3,293,704 + +0.6 3,293,705 - -0.4 3,293,858 - CA264_14055 0.12 -0.3 3,293,874 - CA264_14055 0.13 -0.6 3,293,951 + CA264_14055 0.19 +0.2 3,293,952 - CA264_14055 0.19 +0.6 3,293,953 + CA264_14055 0.19 -0.2 3,293,953 + CA264_14055 0.19 +0.5 3,294,044 + CA264_14055 0.26 -1.4 3,294,044 + CA264_14055 0.26 +0.9 3,294,045 - CA264_14055 0.26 +0.2 3,294,045 - CA264_14055 0.26 +0.0 3,294,077 + CA264_14055 0.28 +0.9 3,294,098 + CA264_14055 0.30 +0.0 3,294,136 + CA264_14055 0.32 -0.1 3,294,136 + CA264_14055 0.32 +0.4 3,294,137 - CA264_14055 0.32 -1.2 3,294,137 - CA264_14055 0.32 -0.3 3,294,214 + CA264_14055 0.38 +0.6 3,294,214 + CA264_14055 0.38 -0.1 3,294,214 + CA264_14055 0.38 +0.6 3,294,215 - CA264_14055 0.38 +0.5 3,294,215 - CA264_14055 0.38 -0.3 3,294,302 - CA264_14055 0.44 +0.0 3,294,328 + CA264_14055 0.46 -0.2 3,294,368 + CA264_14055 0.49 +0.2
Or see this region's nucleotide sequence