Experiment: m.b. Spectinomycin 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_08710 and CA264_08715 are separated by 37 nucleotides CA264_08715 and CA264_08720 are separated by 145 nucleotides
CA264_08710: CA264_08710 - sugar kinase, at 2,024,864 to 2,026,114
_08710
CA264_08715: CA264_08715 - glucosamine-6-phosphate deaminase, at 2,026,152 to 2,028,116
_08715
CA264_08720: CA264_08720 - RND transporter, at 2,028,262 to 2,029,695
_08720
Position (kb)
2026
2027
2028
2029 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2025.166 kb on + strand, within CA264_08710 at 2025.167 kb on - strand, within CA264_08710 at 2025.225 kb on - strand, within CA264_08710 at 2025.230 kb on + strand, within CA264_08710 at 2025.231 kb on - strand, within CA264_08710 at 2025.322 kb on - strand, within CA264_08710 at 2025.383 kb on + strand, within CA264_08710 at 2025.578 kb on - strand, within CA264_08710 at 2025.883 kb on - strand, within CA264_08710 at 2025.883 kb on - strand, within CA264_08710 at 2025.887 kb on - strand, within CA264_08710 at 2025.911 kb on - strand, within CA264_08710 at 2025.914 kb on - strand, within CA264_08710 at 2025.984 kb on - strand, within CA264_08710 at 2026.018 kb on - strand at 2026.018 kb on - strand at 2026.144 kb on - strand at 2026.144 kb on - strand at 2026.144 kb on - strand at 2026.145 kb on + strand at 2026.342 kb on + strand at 2026.380 kb on + strand, within CA264_08715 at 2026.381 kb on - strand, within CA264_08715 at 2026.381 kb on - strand, within CA264_08715 at 2026.418 kb on + strand, within CA264_08715 at 2026.456 kb on - strand, within CA264_08715 at 2026.456 kb on - strand, within CA264_08715 at 2026.458 kb on + strand, within CA264_08715 at 2026.488 kb on + strand, within CA264_08715 at 2026.591 kb on - strand, within CA264_08715 at 2026.602 kb on + strand, within CA264_08715 at 2026.602 kb on + strand, within CA264_08715 at 2026.603 kb on - strand, within CA264_08715 at 2026.615 kb on + strand, within CA264_08715 at 2026.624 kb on + strand, within CA264_08715 at 2026.625 kb on - strand, within CA264_08715 at 2026.680 kb on - strand, within CA264_08715 at 2026.920 kb on + strand, within CA264_08715 at 2027.151 kb on + strand, within CA264_08715 at 2027.152 kb on - strand, within CA264_08715 at 2027.152 kb on - strand, within CA264_08715 at 2027.152 kb on - strand, within CA264_08715 at 2027.152 kb on - strand, within CA264_08715 at 2027.164 kb on + strand, within CA264_08715 at 2027.164 kb on + strand, within CA264_08715 at 2027.164 kb on + strand, within CA264_08715 at 2027.164 kb on + strand, within CA264_08715 at 2027.164 kb on + strand, within CA264_08715 at 2027.165 kb on - strand, within CA264_08715 at 2027.165 kb on - strand, within CA264_08715 at 2027.169 kb on - strand, within CA264_08715 at 2027.175 kb on - strand, within CA264_08715 at 2027.183 kb on - strand, within CA264_08715 at 2027.273 kb on + strand, within CA264_08715 at 2027.321 kb on + strand, within CA264_08715 at 2027.321 kb on + strand, within CA264_08715 at 2027.322 kb on - strand, within CA264_08715 at 2027.439 kb on - strand, within CA264_08715 at 2027.711 kb on - strand, within CA264_08715 at 2027.711 kb on - strand, within CA264_08715 at 2027.786 kb on + strand, within CA264_08715 at 2027.786 kb on + strand, within CA264_08715 at 2027.787 kb on - strand, within CA264_08715 at 2027.787 kb on - strand, within CA264_08715 at 2027.798 kb on - strand, within CA264_08715 at 2027.860 kb on - strand, within CA264_08715 at 2027.949 kb on - strand at 2028.141 kb on + strand at 2028.141 kb on + strand at 2028.142 kb on - strand at 2028.142 kb on - strand at 2028.142 kb on - strand at 2028.210 kb on - strand at 2028.220 kb on - strand at 2028.252 kb on + strand at 2028.253 kb on - strand at 2028.253 kb on - strand at 2028.264 kb on - strand at 2028.295 kb on - strand at 2028.386 kb on + strand at 2028.386 kb on + strand at 2028.521 kb on + strand, within CA264_08720 at 2028.551 kb on + strand, within CA264_08720 at 2028.671 kb on - strand, within CA264_08720 at 2028.677 kb on + strand, within CA264_08720 at 2028.677 kb on + strand at 2028.678 kb on - strand, within CA264_08720 at 2028.755 kb on - strand, within CA264_08720 at 2028.832 kb on - strand, within CA264_08720 at 2028.832 kb on - strand, within CA264_08720 at 2028.842 kb on - strand, within CA264_08720 at 2028.952 kb on + strand, within CA264_08720 at 2028.952 kb on + strand, within CA264_08720 at 2028.952 kb on + strand, within CA264_08720 at 2028.953 kb on - strand, within CA264_08720 at 2028.959 kb on + strand, within CA264_08720 at 2028.960 kb on - strand, within CA264_08720 at 2029.046 kb on - strand, within CA264_08720
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.08 mg/ml remove 2,025,166 + CA264_08710 0.24 -0.1 2,025,167 - CA264_08710 0.24 +2.9 2,025,225 - CA264_08710 0.29 +1.6 2,025,230 + CA264_08710 0.29 +3.9 2,025,231 - CA264_08710 0.29 +2.6 2,025,322 - CA264_08710 0.37 +0.1 2,025,383 + CA264_08710 0.41 +1.0 2,025,578 - CA264_08710 0.57 +1.5 2,025,883 - CA264_08710 0.81 +3.0 2,025,883 - CA264_08710 0.81 +2.1 2,025,887 - CA264_08710 0.82 +0.9 2,025,911 - CA264_08710 0.84 +1.6 2,025,914 - CA264_08710 0.84 +1.6 2,025,984 - CA264_08710 0.90 +1.1 2,026,018 - +2.9 2,026,018 - +2.3 2,026,144 - +2.6 2,026,144 - +0.1 2,026,144 - +1.4 2,026,145 + +1.2 2,026,342 + +1.8 2,026,380 + CA264_08715 0.12 +0.5 2,026,381 - CA264_08715 0.12 -0.9 2,026,381 - CA264_08715 0.12 -0.9 2,026,418 + CA264_08715 0.14 +1.6 2,026,456 - CA264_08715 0.15 -1.8 2,026,456 - CA264_08715 0.15 +2.0 2,026,458 + CA264_08715 0.16 +1.9 2,026,488 + CA264_08715 0.17 +1.2 2,026,591 - CA264_08715 0.22 +1.4 2,026,602 + CA264_08715 0.23 +0.5 2,026,602 + CA264_08715 0.23 +0.9 2,026,603 - CA264_08715 0.23 +0.0 2,026,615 + CA264_08715 0.24 +1.5 2,026,624 + CA264_08715 0.24 +1.2 2,026,625 - CA264_08715 0.24 +1.0 2,026,680 - CA264_08715 0.27 +0.7 2,026,920 + CA264_08715 0.39 +1.8 2,027,151 + CA264_08715 0.51 +1.5 2,027,152 - CA264_08715 0.51 +0.3 2,027,152 - CA264_08715 0.51 +0.8 2,027,152 - CA264_08715 0.51 +1.7 2,027,152 - CA264_08715 0.51 +1.0 2,027,164 + CA264_08715 0.52 +1.0 2,027,164 + CA264_08715 0.52 +1.8 2,027,164 + CA264_08715 0.52 +2.4 2,027,164 + CA264_08715 0.52 +2.4 2,027,164 + CA264_08715 0.52 +1.8 2,027,165 - CA264_08715 0.52 +1.7 2,027,165 - CA264_08715 0.52 +1.2 2,027,169 - CA264_08715 0.52 +0.7 2,027,175 - CA264_08715 0.52 +0.8 2,027,183 - CA264_08715 0.52 +1.2 2,027,273 + CA264_08715 0.57 +0.5 2,027,321 + CA264_08715 0.59 +3.0 2,027,321 + CA264_08715 0.59 +0.3 2,027,322 - CA264_08715 0.60 +0.4 2,027,439 - CA264_08715 0.65 +0.3 2,027,711 - CA264_08715 0.79 +0.1 2,027,711 - CA264_08715 0.79 +2.0 2,027,786 + CA264_08715 0.83 +0.0 2,027,786 + CA264_08715 0.83 +1.8 2,027,787 - CA264_08715 0.83 +0.3 2,027,787 - CA264_08715 0.83 +2.5 2,027,798 - CA264_08715 0.84 +0.3 2,027,860 - CA264_08715 0.87 +0.7 2,027,949 - +1.3 2,028,141 + -0.3 2,028,141 + +0.1 2,028,142 - -0.9 2,028,142 - -0.5 2,028,142 - -0.5 2,028,210 - -2.1 2,028,220 - -0.2 2,028,252 + +0.3 2,028,253 - +0.7 2,028,253 - +0.8 2,028,264 - -1.0 2,028,295 - -1.1 2,028,386 + -0.9 2,028,386 + +0.0 2,028,521 + CA264_08720 0.18 -0.0 2,028,551 + CA264_08720 0.20 +1.0 2,028,671 - CA264_08720 0.29 +0.1 2,028,677 + CA264_08720 0.29 -1.3 2,028,677 + +2.3 2,028,678 - CA264_08720 0.29 -1.4 2,028,755 - CA264_08720 0.34 -0.1 2,028,832 - CA264_08720 0.40 +0.2 2,028,832 - CA264_08720 0.40 +0.7 2,028,842 - CA264_08720 0.40 -0.2 2,028,952 + CA264_08720 0.48 +1.7 2,028,952 + CA264_08720 0.48 -0.2 2,028,952 + CA264_08720 0.48 -1.3 2,028,953 - CA264_08720 0.48 +0.7 2,028,959 + CA264_08720 0.49 +0.2 2,028,960 - CA264_08720 0.49 -0.9 2,029,046 - CA264_08720 0.55 +0.4
Or see this region's nucleotide sequence