Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04095

Experiment: m.b. Spectinomycin 0.08 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04090 and CA264_04095 are separated by 306 nucleotidesCA264_04095 and CA264_04100 are separated by 140 nucleotidesCA264_04100 and CA264_04105 are separated by 313 nucleotides CA264_04090: CA264_04090 - IS3 family transposase, at 948,551 to 949,647 _04090 CA264_04095: CA264_04095 - GAF domain-containing protein, at 949,954 to 950,445 _04095 CA264_04100: CA264_04100 - twin-arginine translocase TatA/TatE family subunit, at 950,586 to 950,798 _04100 CA264_04105: CA264_04105 - hypothetical protein, at 951,112 to 951,660 _04105 Position (kb) 949 950 951Strain fitness (log2 ratio) -2 -1 0 1at 949.736 kb on + strandat 949.892 kb on + strandat 949.905 kb on + strandat 949.905 kb on + strandat 949.906 kb on - strandat 949.910 kb on + strandat 949.911 kb on - strandat 949.911 kb on - strandat 949.914 kb on + strandat 949.915 kb on - strandat 949.933 kb on - strandat 949.962 kb on + strandat 950.038 kb on - strand, within CA264_04095at 950.039 kb on + strand, within CA264_04095at 950.040 kb on - strand, within CA264_04095at 950.040 kb on - strand, within CA264_04095at 950.040 kb on - strand, within CA264_04095at 950.100 kb on - strand, within CA264_04095at 950.183 kb on + strand, within CA264_04095at 950.183 kb on + strand, within CA264_04095at 950.351 kb on - strand, within CA264_04095at 950.390 kb on + strand, within CA264_04095at 950.391 kb on - strand, within CA264_04095at 950.537 kb on + strandat 950.565 kb on + strandat 950.588 kb on - strandat 950.638 kb on - strand, within CA264_04100at 950.680 kb on - strand, within CA264_04100at 950.733 kb on + strand, within CA264_04100at 950.733 kb on + strand, within CA264_04100at 950.738 kb on + strand, within CA264_04100at 950.781 kb on + strandat 950.782 kb on - strandat 950.809 kb on - strandat 950.842 kb on + strandat 950.846 kb on - strandat 950.846 kb on - strandat 950.847 kb on + strandat 950.881 kb on + strandat 950.997 kb on + strandat 950.998 kb on - strandat 951.057 kb on + strandat 951.061 kb on + strandat 951.062 kb on - strandat 951.062 kb on - strandat 951.113 kb on + strandat 951.189 kb on - strand, within CA264_04105at 951.226 kb on - strand, within CA264_04105at 951.226 kb on - strand, within CA264_04105at 951.226 kb on - strand, within CA264_04105at 951.226 kb on - strand, within CA264_04105at 951.311 kb on - strand, within CA264_04105at 951.311 kb on - strand, within CA264_04105at 951.405 kb on - strand, within CA264_04105

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.08 mg/ml
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949,736 + +0.8
949,892 + +0.3
949,905 + -0.5
949,905 + -0.5
949,906 - -0.2
949,910 + +0.4
949,911 - -0.1
949,911 - -0.2
949,914 + +0.6
949,915 - -0.2
949,933 - -2.5
949,962 + -0.3
950,038 - CA264_04095 0.17 -1.2
950,039 + CA264_04095 0.17 -0.0
950,040 - CA264_04095 0.17 -0.5
950,040 - CA264_04095 0.17 -1.5
950,040 - CA264_04095 0.17 +0.4
950,100 - CA264_04095 0.30 -0.9
950,183 + CA264_04095 0.47 +1.1
950,183 + CA264_04095 0.47 -1.0
950,351 - CA264_04095 0.81 -2.2
950,390 + CA264_04095 0.89 -0.1
950,391 - CA264_04095 0.89 +1.4
950,537 + +0.8
950,565 + -0.1
950,588 - -0.3
950,638 - CA264_04100 0.24 +0.3
950,680 - CA264_04100 0.44 +0.4
950,733 + CA264_04100 0.69 -0.4
950,733 + CA264_04100 0.69 -0.1
950,738 + CA264_04100 0.71 -0.1
950,781 + -1.1
950,782 - -2.2
950,809 - -1.0
950,842 + +0.6
950,846 - +0.3
950,846 - +0.4
950,847 + -0.1
950,881 + -0.9
950,997 + -0.5
950,998 - +1.2
951,057 + -0.3
951,061 + -1.2
951,062 - -0.4
951,062 - +0.2
951,113 + -0.2
951,189 - CA264_04105 0.14 -0.6
951,226 - CA264_04105 0.21 +0.1
951,226 - CA264_04105 0.21 -0.8
951,226 - CA264_04105 0.21 +0.0
951,226 - CA264_04105 0.21 +0.1
951,311 - CA264_04105 0.36 +1.1
951,311 - CA264_04105 0.36 +0.5
951,405 - CA264_04105 0.53 -1.5

Or see this region's nucleotide sequence