Experiment: m.b. Spectinomycin 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03125 and CA264_03130 are separated by 160 nucleotides CA264_03130 and CA264_03135 are separated by 54 nucleotides
CA264_03125: CA264_03125 - oxygen-independent coproporphyrinogen III oxidase, at 729,000 to 730,376
_03125
CA264_03130: CA264_03130 - alanine racemase, at 730,537 to 731,655
_03130
CA264_03135: CA264_03135 - hydrolase, at 731,710 to 732,537
_03135
Position (kb) 730
731
732 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 729.547 kb on + strand, within CA264_03125 at 729.632 kb on - strand, within CA264_03125 at 729.632 kb on - strand, within CA264_03125 at 729.632 kb on - strand, within CA264_03125 at 729.638 kb on - strand, within CA264_03125 at 729.638 kb on - strand, within CA264_03125 at 729.721 kb on + strand, within CA264_03125 at 729.725 kb on + strand, within CA264_03125 at 729.726 kb on - strand, within CA264_03125 at 729.747 kb on - strand, within CA264_03125 at 729.747 kb on - strand, within CA264_03125 at 729.749 kb on - strand, within CA264_03125 at 730.106 kb on - strand, within CA264_03125 at 730.157 kb on - strand, within CA264_03125 at 730.264 kb on - strand at 730.330 kb on + strand at 730.458 kb on - strand at 730.458 kb on - strand at 730.532 kb on - strand at 730.545 kb on + strand at 730.545 kb on + strand at 730.545 kb on + strand at 730.546 kb on - strand at 730.555 kb on - strand at 730.560 kb on - strand at 730.628 kb on + strand at 730.647 kb on + strand at 730.762 kb on - strand, within CA264_03130 at 730.954 kb on + strand, within CA264_03130 at 730.985 kb on + strand, within CA264_03130 at 731.037 kb on + strand, within CA264_03130 at 731.038 kb on - strand, within CA264_03130 at 731.041 kb on + strand, within CA264_03130 at 731.041 kb on + strand, within CA264_03130 at 731.041 kb on + strand, within CA264_03130 at 731.042 kb on - strand, within CA264_03130 at 731.042 kb on - strand, within CA264_03130 at 731.042 kb on - strand, within CA264_03130 at 731.059 kb on + strand, within CA264_03130 at 731.060 kb on - strand, within CA264_03130 at 731.121 kb on + strand, within CA264_03130 at 731.121 kb on + strand, within CA264_03130 at 731.121 kb on + strand, within CA264_03130 at 731.275 kb on - strand, within CA264_03130 at 731.286 kb on + strand, within CA264_03130 at 731.287 kb on - strand, within CA264_03130 at 731.287 kb on - strand, within CA264_03130 at 731.287 kb on - strand, within CA264_03130 at 731.338 kb on + strand, within CA264_03130 at 731.371 kb on - strand, within CA264_03130 at 731.395 kb on - strand, within CA264_03130 at 731.687 kb on - strand at 731.687 kb on - strand at 731.689 kb on - strand at 731.764 kb on - strand at 731.885 kb on - strand, within CA264_03135 at 731.885 kb on - strand, within CA264_03135 at 732.058 kb on + strand, within CA264_03135 at 732.128 kb on - strand, within CA264_03135 at 732.293 kb on + strand, within CA264_03135 at 732.294 kb on - strand, within CA264_03135 at 732.294 kb on - strand, within CA264_03135 at 732.308 kb on - strand, within CA264_03135 at 732.308 kb on - strand, within CA264_03135 at 732.334 kb on + strand, within CA264_03135 at 732.401 kb on + strand, within CA264_03135 at 732.530 kb on + strand at 732.536 kb on - strand at 732.566 kb on + strand at 732.589 kb on - strand at 732.594 kb on - strand at 732.594 kb on - strand at 732.594 kb on - strand at 732.594 kb on - strand at 732.595 kb on + strand at 732.596 kb on - strand at 732.596 kb on - strand at 732.614 kb on + strand at 732.615 kb on - strand at 732.617 kb on - strand at 732.617 kb on - strand at 732.617 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.08 mg/ml remove 729,547 + CA264_03125 0.40 -0.8 729,632 - CA264_03125 0.46 -1.1 729,632 - CA264_03125 0.46 -0.2 729,632 - CA264_03125 0.46 -1.5 729,638 - CA264_03125 0.46 -0.1 729,638 - CA264_03125 0.46 -0.6 729,721 + CA264_03125 0.52 -0.7 729,725 + CA264_03125 0.53 -1.6 729,726 - CA264_03125 0.53 -0.6 729,747 - CA264_03125 0.54 +0.3 729,747 - CA264_03125 0.54 +0.2 729,749 - CA264_03125 0.54 -0.3 730,106 - CA264_03125 0.80 -0.9 730,157 - CA264_03125 0.84 -0.4 730,264 - -0.1 730,330 + -2.3 730,458 - -0.7 730,458 - +1.2 730,532 - -3.2 730,545 + -0.2 730,545 + +0.2 730,545 + -0.0 730,546 - -0.6 730,555 - -0.7 730,560 - +1.2 730,628 + +0.5 730,647 + -0.4 730,762 - CA264_03130 0.20 +2.2 730,954 + CA264_03130 0.37 -0.2 730,985 + CA264_03130 0.40 +0.9 731,037 + CA264_03130 0.45 +1.2 731,038 - CA264_03130 0.45 +1.1 731,041 + CA264_03130 0.45 -0.9 731,041 + CA264_03130 0.45 +0.3 731,041 + CA264_03130 0.45 +0.3 731,042 - CA264_03130 0.45 +0.3 731,042 - CA264_03130 0.45 +0.9 731,042 - CA264_03130 0.45 +0.0 731,059 + CA264_03130 0.47 -0.1 731,060 - CA264_03130 0.47 +0.4 731,121 + CA264_03130 0.52 +1.3 731,121 + CA264_03130 0.52 +0.4 731,121 + CA264_03130 0.52 -0.8 731,275 - CA264_03130 0.66 +0.5 731,286 + CA264_03130 0.67 +1.4 731,287 - CA264_03130 0.67 +0.2 731,287 - CA264_03130 0.67 +1.1 731,287 - CA264_03130 0.67 +1.1 731,338 + CA264_03130 0.72 +2.3 731,371 - CA264_03130 0.75 +0.7 731,395 - CA264_03130 0.77 +1.0 731,687 - +0.7 731,687 - +0.2 731,689 - +0.9 731,764 - +0.6 731,885 - CA264_03135 0.21 -0.2 731,885 - CA264_03135 0.21 -0.0 732,058 + CA264_03135 0.42 -0.5 732,128 - CA264_03135 0.50 +0.1 732,293 + CA264_03135 0.70 -0.7 732,294 - CA264_03135 0.71 -1.1 732,294 - CA264_03135 0.71 +1.5 732,308 - CA264_03135 0.72 +0.0 732,308 - CA264_03135 0.72 -1.1 732,334 + CA264_03135 0.75 -1.2 732,401 + CA264_03135 0.83 +0.0 732,530 + -1.0 732,536 - +1.2 732,566 + +0.9 732,589 - -0.3 732,594 - -0.1 732,594 - +0.7 732,594 - +0.9 732,594 - +0.3 732,595 + +2.3 732,596 - +0.6 732,596 - +1.2 732,614 + +0.1 732,615 - +0.6 732,617 - +0.2 732,617 - +0.1 732,617 - +1.3
Or see this region's nucleotide sequence