Experiment: m.b. Spectinomycin 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02675 and CA264_02680 are separated by 190 nucleotides CA264_02680 and CA264_02685 overlap by 11 nucleotides CA264_02685 and CA264_02690 are separated by 71 nucleotides
CA264_02675: CA264_02675 - succinate-semialdehyde dehydrogenase, at 618,860 to 620,224
_02675
CA264_02680: CA264_02680 - RNA polymerase subunit sigma-70, at 620,415 to 620,972
_02680
CA264_02685: CA264_02685 - hypothetical protein, at 620,962 to 621,777
_02685
CA264_02690: CA264_02690 - rhodanese, at 621,849 to 622,328
_02690
Position (kb) 620
621 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 619.520 kb on - strand, within CA264_02675 at 619.775 kb on + strand, within CA264_02675 at 619.775 kb on + strand, within CA264_02675 at 619.776 kb on - strand, within CA264_02675 at 619.776 kb on - strand, within CA264_02675 at 619.854 kb on - strand, within CA264_02675 at 619.945 kb on - strand, within CA264_02675 at 620.074 kb on + strand, within CA264_02675 at 620.074 kb on + strand, within CA264_02675 at 620.075 kb on - strand, within CA264_02675 at 620.151 kb on - strand at 620.173 kb on + strand at 620.216 kb on + strand at 620.248 kb on + strand at 620.249 kb on - strand at 620.249 kb on - strand at 620.249 kb on - strand at 620.249 kb on - strand at 620.249 kb on - strand at 620.252 kb on + strand at 620.268 kb on + strand at 620.268 kb on + strand at 620.270 kb on + strand at 620.271 kb on - strand at 620.339 kb on - strand at 620.346 kb on + strand at 620.347 kb on - strand at 620.353 kb on - strand at 620.353 kb on - strand at 620.359 kb on + strand at 620.360 kb on - strand at 620.511 kb on + strand, within CA264_02680 at 620.667 kb on - strand, within CA264_02680 at 620.765 kb on + strand, within CA264_02680 at 620.847 kb on + strand, within CA264_02680 at 620.886 kb on + strand, within CA264_02680 at 620.933 kb on + strand at 620.934 kb on - strand at 620.980 kb on + strand at 620.980 kb on + strand at 620.984 kb on + strand at 621.169 kb on - strand, within CA264_02685 at 621.180 kb on - strand, within CA264_02685 at 621.393 kb on + strand, within CA264_02685 at 621.394 kb on - strand, within CA264_02685 at 621.457 kb on + strand, within CA264_02685 at 621.457 kb on + strand, within CA264_02685 at 621.458 kb on - strand, within CA264_02685 at 621.459 kb on + strand, within CA264_02685 at 621.539 kb on + strand, within CA264_02685 at 621.540 kb on - strand, within CA264_02685 at 621.542 kb on - strand, within CA264_02685 at 621.635 kb on + strand, within CA264_02685 at 621.636 kb on - strand, within CA264_02685 at 621.636 kb on - strand, within CA264_02685 at 621.642 kb on - strand, within CA264_02685 at 621.751 kb on + strand at 621.751 kb on + strand at 621.832 kb on + strand at 621.836 kb on + strand at 621.859 kb on + strand at 621.892 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.08 mg/ml remove 619,520 - CA264_02675 0.48 -0.9 619,775 + CA264_02675 0.67 -1.2 619,775 + CA264_02675 0.67 -0.6 619,776 - CA264_02675 0.67 -1.6 619,776 - CA264_02675 0.67 -1.1 619,854 - CA264_02675 0.73 -1.4 619,945 - CA264_02675 0.79 -1.4 620,074 + CA264_02675 0.89 -1.2 620,074 + CA264_02675 0.89 +0.1 620,075 - CA264_02675 0.89 -0.4 620,151 - -0.6 620,173 + -0.2 620,216 + -0.4 620,248 + -0.6 620,249 - -0.2 620,249 - -0.2 620,249 - -0.4 620,249 - +0.6 620,249 - -0.9 620,252 + +0.5 620,268 + -0.1 620,268 + -0.3 620,270 + +0.0 620,271 - +0.4 620,339 - +1.9 620,346 + -2.1 620,347 - +0.0 620,353 - -3.2 620,353 - -0.2 620,359 + -1.0 620,360 - +0.7 620,511 + CA264_02680 0.17 -2.1 620,667 - CA264_02680 0.45 -1.6 620,765 + CA264_02680 0.63 +0.2 620,847 + CA264_02680 0.77 +0.1 620,886 + CA264_02680 0.84 +2.5 620,933 + +0.5 620,934 - +1.1 620,980 + +0.9 620,980 + -0.4 620,984 + -0.1 621,169 - CA264_02685 0.25 +0.5 621,180 - CA264_02685 0.27 +0.9 621,393 + CA264_02685 0.53 -0.1 621,394 - CA264_02685 0.53 +1.9 621,457 + CA264_02685 0.61 -0.2 621,457 + CA264_02685 0.61 -1.0 621,458 - CA264_02685 0.61 +1.7 621,459 + CA264_02685 0.61 -0.7 621,539 + CA264_02685 0.71 -0.7 621,540 - CA264_02685 0.71 -1.6 621,542 - CA264_02685 0.71 -0.8 621,635 + CA264_02685 0.82 -0.5 621,636 - CA264_02685 0.83 -0.2 621,636 - CA264_02685 0.83 -1.4 621,642 - CA264_02685 0.83 +0.5 621,751 + +0.4 621,751 + +0.9 621,832 + -0.2 621,836 + -0.1 621,859 + -2.1 621,892 - +0.0
Or see this region's nucleotide sequence