Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01730

Experiment: m.b. Spectinomycin 0.08 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01720 and CA264_01725 are separated by 2 nucleotidesCA264_01725 and CA264_01730 are separated by 147 nucleotidesCA264_01730 and CA264_01735 are separated by 206 nucleotides CA264_01720: CA264_01720 - NADH-ubiquinone/plastoquinone oxidoreductase chain 6, at 402,020 to 402,547 _01720 CA264_01725: CA264_01725 - NADH-quinone oxidoreductase subunit K, at 402,550 to 402,864 _01725 CA264_01730: CA264_01730 - NADH-quinone oxidoreductase subunit L, at 403,012 to 405,156 _01730 CA264_01735: CA264_01735 - oxidoreductase, at 405,363 to 407,105 _01735 Position (kb) 403 404 405 406Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 402.030 kb on + strandat 402.030 kb on + strandat 402.031 kb on - strandat 402.031 kb on - strandat 402.091 kb on - strand, within CA264_01720at 402.241 kb on + strand, within CA264_01720at 402.289 kb on - strand, within CA264_01720at 402.298 kb on - strand, within CA264_01720at 402.323 kb on - strand, within CA264_01720at 402.325 kb on - strand, within CA264_01720at 402.341 kb on + strand, within CA264_01720at 402.343 kb on + strand, within CA264_01720at 402.343 kb on + strand, within CA264_01720at 402.343 kb on + strand, within CA264_01720at 402.344 kb on - strand, within CA264_01720at 402.346 kb on + strand, within CA264_01720at 402.346 kb on + strand, within CA264_01720at 402.352 kb on + strand, within CA264_01720at 402.353 kb on - strand, within CA264_01720at 402.462 kb on + strand, within CA264_01720at 402.463 kb on - strand, within CA264_01720at 402.519 kb on - strandat 402.519 kb on - strandat 402.520 kb on + strandat 402.520 kb on + strandat 402.521 kb on - strandat 402.574 kb on - strandat 402.579 kb on - strandat 402.585 kb on - strand, within CA264_01725at 402.815 kb on - strand, within CA264_01725at 402.862 kb on + strandat 402.862 kb on + strandat 402.880 kb on + strandat 402.880 kb on + strandat 402.880 kb on + strandat 402.880 kb on + strandat 402.897 kb on + strandat 402.897 kb on + strandat 402.897 kb on + strandat 402.901 kb on + strandat 402.917 kb on + strandat 402.917 kb on + strandat 402.917 kb on + strandat 402.918 kb on - strandat 402.918 kb on - strandat 402.923 kb on + strandat 402.953 kb on + strandat 402.972 kb on - strandat 403.002 kb on - strandat 403.002 kb on - strandat 403.084 kb on + strandat 403.128 kb on + strandat 403.129 kb on - strandat 403.152 kb on + strandat 403.199 kb on - strandat 403.241 kb on + strand, within CA264_01730at 403.364 kb on - strand, within CA264_01730at 403.402 kb on - strand, within CA264_01730at 403.410 kb on - strand, within CA264_01730at 403.544 kb on + strand, within CA264_01730at 403.563 kb on - strand, within CA264_01730at 403.592 kb on - strand, within CA264_01730at 403.626 kb on - strand, within CA264_01730at 403.669 kb on - strand, within CA264_01730at 403.707 kb on - strand, within CA264_01730at 403.713 kb on - strand, within CA264_01730at 403.753 kb on - strand, within CA264_01730at 403.763 kb on + strand, within CA264_01730at 403.842 kb on - strand, within CA264_01730at 403.871 kb on + strand, within CA264_01730at 403.873 kb on + strand, within CA264_01730at 404.010 kb on + strand, within CA264_01730at 404.031 kb on + strand, within CA264_01730at 404.143 kb on - strand, within CA264_01730at 404.143 kb on - strand, within CA264_01730at 404.230 kb on - strand, within CA264_01730at 404.243 kb on - strand, within CA264_01730at 404.267 kb on + strand, within CA264_01730at 404.369 kb on - strand, within CA264_01730at 404.370 kb on + strand, within CA264_01730at 404.371 kb on - strand, within CA264_01730at 404.470 kb on - strand, within CA264_01730at 404.483 kb on + strand, within CA264_01730at 404.615 kb on + strand, within CA264_01730at 404.615 kb on + strand, within CA264_01730at 404.616 kb on - strand, within CA264_01730at 404.630 kb on + strand, within CA264_01730at 404.630 kb on + strand, within CA264_01730at 404.643 kb on + strand, within CA264_01730at 404.728 kb on - strand, within CA264_01730at 404.732 kb on + strand, within CA264_01730at 404.772 kb on + strand, within CA264_01730at 404.796 kb on - strand, within CA264_01730at 404.822 kb on + strand, within CA264_01730at 404.970 kb on - strandat 405.137 kb on + strandat 405.139 kb on + strandat 405.141 kb on + strandat 405.141 kb on + strandat 405.142 kb on - strandat 405.142 kb on - strandat 405.142 kb on - strandat 405.160 kb on + strandat 405.214 kb on - strandat 405.216 kb on + strandat 405.217 kb on - strandat 405.217 kb on - strandat 405.228 kb on + strandat 405.228 kb on + strandat 405.245 kb on + strandat 405.246 kb on - strandat 405.246 kb on - strandat 405.264 kb on + strandat 405.264 kb on + strandat 405.264 kb on + strandat 405.289 kb on - strandat 405.329 kb on + strandat 405.329 kb on + strandat 405.508 kb on - strandat 405.572 kb on - strand, within CA264_01735at 405.741 kb on + strand, within CA264_01735at 405.741 kb on + strand, within CA264_01735at 405.785 kb on - strand, within CA264_01735at 405.845 kb on - strand, within CA264_01735at 405.845 kb on - strand, within CA264_01735at 405.885 kb on - strand, within CA264_01735at 405.893 kb on + strand, within CA264_01735at 405.900 kb on - strand, within CA264_01735

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.08 mg/ml
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402,030 + +0.4
402,030 + +0.4
402,031 - -0.6
402,031 - -0.6
402,091 - CA264_01720 0.13 -0.4
402,241 + CA264_01720 0.42 -4.4
402,289 - CA264_01720 0.51 -0.4
402,298 - CA264_01720 0.53 +0.7
402,323 - CA264_01720 0.57 -2.5
402,325 - CA264_01720 0.58 -0.6
402,341 + CA264_01720 0.61 -3.1
402,343 + CA264_01720 0.61 -2.1
402,343 + CA264_01720 0.61 +1.3
402,343 + CA264_01720 0.61 -1.8
402,344 - CA264_01720 0.61 -1.0
402,346 + CA264_01720 0.62 -1.9
402,346 + CA264_01720 0.62 -1.5
402,352 + CA264_01720 0.63 -0.8
402,353 - CA264_01720 0.63 -1.4
402,462 + CA264_01720 0.84 -2.8
402,463 - CA264_01720 0.84 -0.9
402,519 - -2.4
402,519 - -1.6
402,520 + -0.9
402,520 + -0.9
402,521 - -2.1
402,574 - -3.0
402,579 - -2.5
402,585 - CA264_01725 0.11 -2.5
402,815 - CA264_01725 0.84 -1.6
402,862 + +1.1
402,862 + -0.6
402,880 + +1.0
402,880 + +1.0
402,880 + +0.4
402,880 + +0.4
402,897 + +0.5
402,897 + +0.3
402,897 + +0.2
402,901 + +0.4
402,917 + +1.0
402,917 + +1.0
402,917 + +1.0
402,918 - -0.4
402,918 - -0.4
402,923 + -0.0
402,953 + -0.6
402,972 - -0.8
403,002 - -0.8
403,002 - +0.0
403,084 + -2.1
403,128 + -1.7
403,129 - -0.0
403,152 + -0.6
403,199 - -3.0
403,241 + CA264_01730 0.11 -0.0
403,364 - CA264_01730 0.16 +0.2
403,402 - CA264_01730 0.18 -1.9
403,410 - CA264_01730 0.19 -1.2
403,544 + CA264_01730 0.25 -2.5
403,563 - CA264_01730 0.26 +2.0
403,592 - CA264_01730 0.27 -2.5
403,626 - CA264_01730 0.29 -2.0
403,669 - CA264_01730 0.31 -2.8
403,707 - CA264_01730 0.32 -2.8
403,713 - CA264_01730 0.33 -1.6
403,753 - CA264_01730 0.35 -2.3
403,763 + CA264_01730 0.35 -2.5
403,842 - CA264_01730 0.39 -2.0
403,871 + CA264_01730 0.40 -3.0
403,873 + CA264_01730 0.40 -0.8
404,010 + CA264_01730 0.47 -0.6
404,031 + CA264_01730 0.48 -2.6
404,143 - CA264_01730 0.53 -2.0
404,143 - CA264_01730 0.53 -0.6
404,230 - CA264_01730 0.57 -2.1
404,243 - CA264_01730 0.57 +1.0
404,267 + CA264_01730 0.59 -0.8
404,369 - CA264_01730 0.63 -2.9
404,370 + CA264_01730 0.63 -1.8
404,371 - CA264_01730 0.63 -2.5
404,470 - CA264_01730 0.68 -2.4
404,483 + CA264_01730 0.69 -2.0
404,615 + CA264_01730 0.75 -2.1
404,615 + CA264_01730 0.75 -2.8
404,616 - CA264_01730 0.75 -1.5
404,630 + CA264_01730 0.75 -1.8
404,630 + CA264_01730 0.75 -2.0
404,643 + CA264_01730 0.76 -2.6
404,728 - CA264_01730 0.80 -1.4
404,732 + CA264_01730 0.80 -1.0
404,772 + CA264_01730 0.82 -0.6
404,796 - CA264_01730 0.83 -2.7
404,822 + CA264_01730 0.84 -3.0
404,970 - -0.6
405,137 + -0.8
405,139 + -1.5
405,141 + -1.0
405,141 + -1.8
405,142 - -0.0
405,142 - -2.6
405,142 - -2.4
405,160 + +0.4
405,214 - -1.4
405,216 + +1.0
405,217 - +0.5
405,217 - -1.9
405,228 + +0.7
405,228 + +1.2
405,245 + +2.1
405,246 - -0.0
405,246 - +0.3
405,264 + -0.7
405,264 + +0.4
405,264 + +0.4
405,289 - -0.2
405,329 + -1.9
405,329 + +0.9
405,508 - -1.6
405,572 - CA264_01735 0.12 -2.3
405,741 + CA264_01735 0.22 -4.2
405,741 + CA264_01735 0.22 -1.6
405,785 - CA264_01735 0.24 -0.5
405,845 - CA264_01735 0.28 -2.2
405,845 - CA264_01735 0.28 -0.3
405,885 - CA264_01735 0.30 -2.4
405,893 + CA264_01735 0.30 -3.1
405,900 - CA264_01735 0.31 -2.5

Or see this region's nucleotide sequence