Experiment: m.b. Spectinomycin 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01635 and CA264_01640 are separated by 253 nucleotides CA264_01640 and CA264_01645 are separated by 354 nucleotides CA264_01645 and CA264_01650 are separated by 168 nucleotides
CA264_01635: CA264_01635 - nicotinamidase, at 384,893 to 385,504
_01635
CA264_01640: CA264_01640 - DEAD/DEAH box helicase, at 385,758 to 387,176
_01640
CA264_01645: CA264_01645 - hypothetical protein, at 387,531 to 387,713
_01645
CA264_01650: CA264_01650 - YebC/PmpR family DNA-binding transcriptional regulator, at 387,882 to 388,637
_01650
Position (kb) 385
386
387
388 Strain fitness (log2 ratio) -2
-1
0
1
2 at 384.784 kb on + strand at 384.796 kb on + strand at 384.815 kb on - strand at 384.872 kb on - strand at 384.872 kb on - strand at 384.873 kb on + strand at 384.873 kb on + strand at 384.874 kb on - strand at 384.907 kb on + strand at 384.942 kb on - strand at 385.000 kb on + strand, within CA264_01635 at 385.000 kb on + strand, within CA264_01635 at 385.000 kb on + strand, within CA264_01635 at 385.006 kb on - strand, within CA264_01635 at 385.006 kb on - strand, within CA264_01635 at 385.056 kb on + strand, within CA264_01635 at 385.099 kb on + strand, within CA264_01635 at 385.100 kb on - strand, within CA264_01635 at 385.161 kb on + strand, within CA264_01635 at 385.161 kb on + strand, within CA264_01635 at 385.162 kb on - strand, within CA264_01635 at 385.170 kb on - strand, within CA264_01635 at 385.301 kb on + strand, within CA264_01635 at 385.302 kb on - strand, within CA264_01635 at 385.478 kb on + strand at 385.479 kb on - strand at 385.479 kb on - strand at 385.479 kb on - strand at 385.479 kb on - strand at 385.479 kb on - strand at 385.479 kb on - strand at 385.484 kb on + strand at 385.487 kb on + strand at 385.493 kb on + strand at 385.504 kb on + strand at 385.504 kb on + strand at 385.504 kb on + strand at 385.504 kb on + strand at 385.505 kb on - strand at 385.505 kb on - strand at 385.505 kb on - strand at 385.508 kb on - strand at 385.508 kb on - strand at 385.514 kb on + strand at 385.517 kb on + strand at 385.517 kb on + strand at 385.518 kb on - strand at 385.518 kb on - strand at 385.518 kb on - strand at 385.524 kb on - strand at 385.543 kb on + strand at 385.543 kb on + strand at 385.543 kb on + strand at 385.545 kb on + strand at 385.545 kb on + strand at 385.546 kb on - strand at 385.546 kb on - strand at 385.546 kb on - strand at 385.546 kb on - strand at 385.546 kb on - strand at 385.547 kb on + strand at 385.548 kb on - strand at 385.692 kb on + strand at 385.692 kb on + strand at 385.693 kb on - strand at 385.760 kb on - strand at 385.814 kb on + strand at 385.814 kb on + strand at 386.201 kb on + strand, within CA264_01640 at 386.255 kb on - strand, within CA264_01640 at 386.255 kb on - strand, within CA264_01640 at 386.486 kb on + strand, within CA264_01640 at 386.486 kb on + strand, within CA264_01640 at 386.487 kb on - strand, within CA264_01640 at 386.487 kb on - strand, within CA264_01640 at 386.558 kb on - strand, within CA264_01640 at 386.558 kb on - strand, within CA264_01640 at 386.558 kb on - strand, within CA264_01640 at 386.580 kb on + strand, within CA264_01640 at 386.582 kb on + strand, within CA264_01640 at 386.583 kb on - strand, within CA264_01640 at 386.802 kb on + strand, within CA264_01640 at 386.806 kb on + strand, within CA264_01640 at 386.806 kb on + strand, within CA264_01640 at 386.850 kb on - strand, within CA264_01640 at 386.853 kb on - strand, within CA264_01640 at 386.973 kb on + strand, within CA264_01640 at 386.974 kb on - strand, within CA264_01640 at 386.974 kb on - strand, within CA264_01640 at 386.974 kb on - strand, within CA264_01640 at 387.029 kb on - strand, within CA264_01640 at 387.053 kb on + strand at 387.054 kb on - strand at 387.169 kb on + strand at 387.254 kb on - strand at 387.295 kb on - strand at 387.300 kb on + strand at 387.301 kb on - strand at 387.304 kb on - strand at 387.306 kb on - strand at 387.306 kb on - strand at 387.310 kb on - strand at 387.354 kb on + strand at 387.383 kb on + strand at 387.471 kb on + strand at 387.471 kb on + strand at 387.471 kb on + strand at 387.471 kb on + strand at 387.472 kb on - strand at 387.472 kb on - strand at 387.472 kb on - strand at 387.503 kb on + strand at 387.504 kb on - strand at 387.530 kb on - strand at 387.579 kb on - strand, within CA264_01645 at 387.633 kb on + strand, within CA264_01645 at 387.683 kb on + strand, within CA264_01645 at 387.690 kb on + strand, within CA264_01645 at 387.741 kb on + strand at 387.882 kb on - strand at 387.953 kb on - strand at 388.040 kb on - strand, within CA264_01650 at 388.040 kb on - strand, within CA264_01650 at 388.040 kb on - strand, within CA264_01650 at 388.138 kb on - strand, within CA264_01650 at 388.171 kb on - strand, within CA264_01650 at 388.171 kb on - strand, within CA264_01650 at 388.171 kb on - strand, within CA264_01650
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.08 mg/ml remove 384,784 + -1.0 384,796 + -0.7 384,815 - -0.3 384,872 - -0.4 384,872 - -0.4 384,873 + +0.3 384,873 + -0.4 384,874 - -0.3 384,907 + -1.8 384,942 - -1.4 385,000 + CA264_01635 0.17 +1.0 385,000 + CA264_01635 0.17 -1.6 385,000 + CA264_01635 0.17 +0.4 385,006 - CA264_01635 0.18 +0.0 385,006 - CA264_01635 0.18 -0.5 385,056 + CA264_01635 0.27 -0.6 385,099 + CA264_01635 0.34 -0.2 385,100 - CA264_01635 0.34 -0.8 385,161 + CA264_01635 0.44 -0.7 385,161 + CA264_01635 0.44 -2.0 385,162 - CA264_01635 0.44 -0.0 385,170 - CA264_01635 0.45 +0.4 385,301 + CA264_01635 0.67 +0.3 385,302 - CA264_01635 0.67 -1.1 385,478 + -1.6 385,479 - -0.6 385,479 - -0.2 385,479 - -0.2 385,479 - -0.0 385,479 - -0.4 385,479 - +0.1 385,484 + -0.6 385,487 + -0.8 385,493 + -0.2 385,504 + -0.4 385,504 + -1.0 385,504 + -0.6 385,504 + -0.2 385,505 - -0.2 385,505 - -0.7 385,505 - -0.4 385,508 - +0.5 385,508 - +2.0 385,514 + -0.9 385,517 + -1.6 385,517 + -0.4 385,518 - +1.0 385,518 - -0.4 385,518 - +0.3 385,524 - -1.0 385,543 + -1.4 385,543 + +0.6 385,543 + +0.5 385,545 + -0.5 385,545 + +0.5 385,546 - -0.3 385,546 - +0.8 385,546 - +1.4 385,546 - +0.6 385,546 - +1.0 385,547 + +0.6 385,548 - +0.5 385,692 + -0.8 385,692 + +0.5 385,693 - -0.1 385,760 - -1.5 385,814 + +0.4 385,814 + -1.7 386,201 + CA264_01640 0.31 -1.6 386,255 - CA264_01640 0.35 -2.3 386,255 - CA264_01640 0.35 +1.5 386,486 + CA264_01640 0.51 -0.9 386,486 + CA264_01640 0.51 -0.3 386,487 - CA264_01640 0.51 -1.4 386,487 - CA264_01640 0.51 -2.5 386,558 - CA264_01640 0.56 -1.0 386,558 - CA264_01640 0.56 -2.1 386,558 - CA264_01640 0.56 -1.6 386,580 + CA264_01640 0.58 -1.4 386,582 + CA264_01640 0.58 -1.2 386,583 - CA264_01640 0.58 -2.4 386,802 + CA264_01640 0.74 -1.8 386,806 + CA264_01640 0.74 -2.0 386,806 + CA264_01640 0.74 -0.0 386,850 - CA264_01640 0.77 -0.0 386,853 - CA264_01640 0.77 -2.2 386,973 + CA264_01640 0.86 -2.0 386,974 - CA264_01640 0.86 -0.6 386,974 - CA264_01640 0.86 -1.9 386,974 - CA264_01640 0.86 -1.9 387,029 - CA264_01640 0.90 -1.4 387,053 + -1.6 387,054 - +1.9 387,169 + -2.2 387,254 - -0.2 387,295 - -0.8 387,300 + -0.2 387,301 - +0.7 387,304 - -0.1 387,306 - +0.4 387,306 - +1.1 387,310 - +0.9 387,354 + +0.7 387,383 + -0.3 387,471 + -0.2 387,471 + +0.3 387,471 + -0.3 387,471 + -0.5 387,472 - +0.5 387,472 - +0.7 387,472 - +2.5 387,503 + +0.9 387,504 - +0.2 387,530 - -0.4 387,579 - CA264_01645 0.26 +0.5 387,633 + CA264_01645 0.56 -0.1 387,683 + CA264_01645 0.83 +0.1 387,690 + CA264_01645 0.87 +0.5 387,741 + -0.3 387,882 - -0.3 387,953 - +0.7 388,040 - CA264_01650 0.21 +0.9 388,040 - CA264_01650 0.21 +0.4 388,040 - CA264_01650 0.21 -0.3 388,138 - CA264_01650 0.34 -0.1 388,171 - CA264_01650 0.38 +0.1 388,171 - CA264_01650 0.38 +0.9 388,171 - CA264_01650 0.38 +0.3
Or see this region's nucleotide sequence