Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01205

Experiment: m.b. Spectinomycin 0.08 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01200 and CA264_01205 are separated by 58 nucleotidesCA264_01205 and CA264_01210 are separated by 310 nucleotides CA264_01200: CA264_01200 - zinc carboxypeptidase, at 276,412 to 279,000 _01200 CA264_01205: CA264_01205 - hypothetical protein, at 279,059 to 279,289 _01205 CA264_01210: CA264_01210 - hypothetical protein, at 279,600 to 285,683 _01210 Position (kb) 279 280Strain fitness (log2 ratio) -2 -1 0 1 2 3at 278.127 kb on - strand, within CA264_01200at 278.151 kb on + strand, within CA264_01200at 278.152 kb on - strand, within CA264_01200at 278.249 kb on - strand, within CA264_01200at 278.339 kb on + strand, within CA264_01200at 278.346 kb on + strand, within CA264_01200at 278.365 kb on + strand, within CA264_01200at 278.365 kb on + strand, within CA264_01200at 278.366 kb on - strand, within CA264_01200at 278.461 kb on - strand, within CA264_01200at 278.461 kb on - strand, within CA264_01200at 278.463 kb on + strand, within CA264_01200at 278.464 kb on - strand, within CA264_01200at 278.506 kb on + strand, within CA264_01200at 278.506 kb on + strand, within CA264_01200at 278.538 kb on - strand, within CA264_01200at 278.539 kb on + strand, within CA264_01200at 278.662 kb on - strand, within CA264_01200at 278.757 kb on - strandat 278.757 kb on - strandat 278.804 kb on + strandat 278.805 kb on - strandat 278.854 kb on + strandat 278.871 kb on + strandat 278.872 kb on - strandat 278.889 kb on - strandat 278.909 kb on + strandat 278.910 kb on - strandat 278.910 kb on - strandat 278.910 kb on - strandat 279.004 kb on + strandat 279.041 kb on + strandat 279.041 kb on + strandat 279.079 kb on - strandat 279.086 kb on + strand, within CA264_01205at 279.087 kb on - strand, within CA264_01205at 279.087 kb on - strand, within CA264_01205at 279.087 kb on - strand, within CA264_01205at 279.105 kb on - strand, within CA264_01205at 279.149 kb on - strand, within CA264_01205at 279.152 kb on - strand, within CA264_01205at 279.152 kb on - strand, within CA264_01205at 279.164 kb on - strand, within CA264_01205at 279.164 kb on - strand, within CA264_01205at 279.188 kb on + strand, within CA264_01205at 279.233 kb on + strand, within CA264_01205at 279.248 kb on - strand, within CA264_01205at 279.438 kb on - strandat 279.570 kb on + strandat 279.571 kb on - strandat 279.591 kb on + strandat 279.600 kb on - strandat 279.624 kb on - strandat 279.624 kb on - strandat 279.791 kb on - strandat 279.791 kb on - strandat 279.806 kb on - strandat 279.806 kb on - strandat 279.823 kb on + strandat 279.824 kb on - strandat 279.839 kb on - strandat 279.839 kb on - strandat 279.839 kb on - strandat 279.839 kb on - strandat 279.845 kb on - strandat 279.896 kb on + strandat 279.899 kb on + strandat 279.900 kb on - strandat 279.900 kb on - strandat 279.902 kb on + strandat 279.921 kb on - strandat 279.943 kb on + strandat 279.949 kb on + strandat 279.949 kb on + strandat 279.949 kb on + strandat 279.955 kb on + strandat 279.956 kb on - strandat 280.000 kb on + strandat 280.001 kb on - strandat 280.026 kb on + strandat 280.027 kb on - strandat 280.031 kb on + strandat 280.061 kb on + strandat 280.062 kb on - strandat 280.070 kb on + strandat 280.091 kb on + strandat 280.091 kb on + strandat 280.092 kb on - strandat 280.106 kb on + strandat 280.107 kb on - strandat 280.109 kb on + strandat 280.109 kb on + strandat 280.110 kb on - strandat 280.111 kb on + strandat 280.112 kb on - strandat 280.114 kb on + strandat 280.115 kb on - strandat 280.149 kb on - strandat 280.272 kb on + strand, within CA264_01210at 280.272 kb on + strand, within CA264_01210at 280.273 kb on - strand, within CA264_01210at 280.273 kb on - strand, within CA264_01210at 280.273 kb on - strand, within CA264_01210

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.08 mg/ml
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278,127 - CA264_01200 0.66 +0.5
278,151 + CA264_01200 0.67 -1.0
278,152 - CA264_01200 0.67 -0.2
278,249 - CA264_01200 0.71 +1.7
278,339 + CA264_01200 0.74 -1.0
278,346 + CA264_01200 0.75 -0.1
278,365 + CA264_01200 0.75 -0.6
278,365 + CA264_01200 0.75 -0.1
278,366 - CA264_01200 0.75 +1.0
278,461 - CA264_01200 0.79 +0.2
278,461 - CA264_01200 0.79 -0.2
278,463 + CA264_01200 0.79 +0.7
278,464 - CA264_01200 0.79 -0.4
278,506 + CA264_01200 0.81 +0.2
278,506 + CA264_01200 0.81 -2.2
278,538 - CA264_01200 0.82 +0.8
278,539 + CA264_01200 0.82 +1.0
278,662 - CA264_01200 0.87 -0.6
278,757 - +0.4
278,757 - +1.2
278,804 + -0.0
278,805 - +0.5
278,854 + -0.6
278,871 + +3.0
278,872 - -0.3
278,889 - +0.1
278,909 + -0.2
278,910 - +0.6
278,910 - +0.2
278,910 - -0.3
279,004 + +0.6
279,041 + +0.2
279,041 + +2.0
279,079 - +0.3
279,086 + CA264_01205 0.12 +1.6
279,087 - CA264_01205 0.12 -2.1
279,087 - CA264_01205 0.12 -0.1
279,087 - CA264_01205 0.12 -0.1
279,105 - CA264_01205 0.20 -0.4
279,149 - CA264_01205 0.39 +0.3
279,152 - CA264_01205 0.40 +0.8
279,152 - CA264_01205 0.40 -0.4
279,164 - CA264_01205 0.45 +0.7
279,164 - CA264_01205 0.45 +0.7
279,188 + CA264_01205 0.56 +0.8
279,233 + CA264_01205 0.75 +0.5
279,248 - CA264_01205 0.82 -0.2
279,438 - +1.0
279,570 + -0.6
279,571 - -0.2
279,591 + +0.2
279,600 - +0.4
279,624 - +0.5
279,624 - +0.8
279,791 - -0.0
279,791 - -0.9
279,806 - +1.0
279,806 - +0.3
279,823 + -0.3
279,824 - +2.0
279,839 - +1.0
279,839 - -0.3
279,839 - +0.2
279,839 - +0.5
279,845 - +0.6
279,896 + +0.2
279,899 + +1.7
279,900 - +0.4
279,900 - -0.2
279,902 + +0.8
279,921 - +0.6
279,943 + +2.0
279,949 + -0.6
279,949 + +1.0
279,949 + +0.1
279,955 + -0.0
279,956 - +0.2
280,000 + +0.3
280,001 - +0.2
280,026 + +0.5
280,027 - -0.4
280,031 + +2.0
280,061 + +1.0
280,062 - +2.1
280,070 + -1.4
280,091 + -0.8
280,091 + +0.1
280,092 - +0.2
280,106 + -1.5
280,107 - +0.7
280,109 + -1.0
280,109 + -1.1
280,110 - +0.6
280,111 + -1.6
280,112 - +0.0
280,114 + +0.2
280,115 - -0.0
280,149 - -0.4
280,272 + CA264_01210 0.11 +1.0
280,272 + CA264_01210 0.11 -0.9
280,273 - CA264_01210 0.11 +1.0
280,273 - CA264_01210 0.11 +0.2
280,273 - CA264_01210 0.11 +0.2

Or see this region's nucleotide sequence