Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01015

Experiment: m.b. Spectinomycin 0.08 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01010 and CA264_01015 are separated by 41 nucleotidesCA264_01015 and CA264_01020 are separated by 86 nucleotides CA264_01010: CA264_01010 - group 1 glycosyl transferase, at 220,467 to 221,612 _01010 CA264_01015: CA264_01015 - glycoside hydrolase, at 221,654 to 222,613 _01015 CA264_01020: CA264_01020 - hypothetical protein, at 222,700 to 223,734 _01020 Position (kb) 221 222 223Strain fitness (log2 ratio) -2 -1 0 1 2 3at 220.709 kb on + strand, within CA264_01010at 220.802 kb on - strand, within CA264_01010at 220.813 kb on + strand, within CA264_01010at 220.889 kb on + strand, within CA264_01010at 220.889 kb on + strand, within CA264_01010at 220.890 kb on - strand, within CA264_01010at 220.892 kb on - strand, within CA264_01010at 220.895 kb on - strand, within CA264_01010at 220.943 kb on + strand, within CA264_01010at 220.943 kb on + strand, within CA264_01010at 220.944 kb on - strand, within CA264_01010at 220.944 kb on - strand, within CA264_01010at 220.949 kb on + strand, within CA264_01010at 220.955 kb on + strand, within CA264_01010at 220.959 kb on + strand, within CA264_01010at 221.082 kb on + strand, within CA264_01010at 221.175 kb on - strand, within CA264_01010at 221.178 kb on + strand, within CA264_01010at 221.236 kb on + strand, within CA264_01010at 221.236 kb on + strand, within CA264_01010at 221.237 kb on - strand, within CA264_01010at 221.268 kb on - strand, within CA264_01010at 221.313 kb on - strand, within CA264_01010at 221.334 kb on + strand, within CA264_01010at 221.335 kb on - strand, within CA264_01010at 221.335 kb on - strand, within CA264_01010at 221.335 kb on - strand, within CA264_01010at 221.379 kb on - strand, within CA264_01010at 221.382 kb on - strand, within CA264_01010at 221.389 kb on + strand, within CA264_01010at 221.389 kb on + strand, within CA264_01010at 221.392 kb on + strand, within CA264_01010at 221.392 kb on + strand, within CA264_01010at 221.393 kb on - strand, within CA264_01010at 221.413 kb on - strand, within CA264_01010at 221.413 kb on - strand, within CA264_01010at 221.435 kb on - strand, within CA264_01010at 221.443 kb on + strand, within CA264_01010at 221.514 kb on + strandat 221.569 kb on - strandat 221.571 kb on - strandat 221.571 kb on - strandat 221.571 kb on - strandat 221.581 kb on + strandat 221.582 kb on - strandat 221.600 kb on + strandat 221.601 kb on - strandat 221.608 kb on + strandat 221.608 kb on + strandat 221.610 kb on + strandat 221.666 kb on + strandat 221.667 kb on - strandat 221.681 kb on - strandat 221.731 kb on + strandat 221.738 kb on + strandat 221.781 kb on + strand, within CA264_01015at 221.782 kb on - strand, within CA264_01015at 221.790 kb on - strand, within CA264_01015at 221.790 kb on - strand, within CA264_01015at 221.793 kb on + strand, within CA264_01015at 221.794 kb on - strand, within CA264_01015at 221.794 kb on - strand, within CA264_01015at 221.794 kb on - strand, within CA264_01015at 221.794 kb on - strand, within CA264_01015at 221.803 kb on - strand, within CA264_01015at 221.803 kb on - strand, within CA264_01015at 221.813 kb on + strand, within CA264_01015at 221.813 kb on + strand, within CA264_01015at 221.928 kb on + strand, within CA264_01015at 221.928 kb on + strand, within CA264_01015at 222.005 kb on - strand, within CA264_01015at 222.032 kb on - strand, within CA264_01015at 222.036 kb on - strand, within CA264_01015at 222.039 kb on + strand, within CA264_01015at 222.039 kb on + strand, within CA264_01015at 222.039 kb on + strand, within CA264_01015at 222.040 kb on - strand, within CA264_01015at 222.072 kb on + strand, within CA264_01015at 222.073 kb on - strand, within CA264_01015at 222.073 kb on - strand, within CA264_01015at 222.216 kb on + strand, within CA264_01015at 222.289 kb on + strand, within CA264_01015at 222.290 kb on - strand, within CA264_01015at 222.310 kb on + strand, within CA264_01015at 222.349 kb on + strand, within CA264_01015at 222.350 kb on - strand, within CA264_01015at 222.364 kb on - strand, within CA264_01015at 222.393 kb on + strand, within CA264_01015at 222.434 kb on + strand, within CA264_01015at 222.462 kb on - strand, within CA264_01015at 222.462 kb on - strand, within CA264_01015at 222.465 kb on + strand, within CA264_01015at 222.466 kb on - strand, within CA264_01015at 222.542 kb on - strandat 222.569 kb on - strandat 222.569 kb on - strandat 222.572 kb on + strandat 222.572 kb on + strandat 222.573 kb on - strandat 222.573 kb on - strandat 222.611 kb on + strandat 222.612 kb on - strandat 222.612 kb on - strandat 222.612 kb on - strandat 222.612 kb on - strandat 222.614 kb on + strandat 222.621 kb on + strandat 222.621 kb on + strandat 222.622 kb on - strandat 222.622 kb on - strandat 222.654 kb on - strandat 222.664 kb on + strandat 222.671 kb on - strandat 222.699 kb on + strandat 222.700 kb on - strandat 222.748 kb on - strandat 222.774 kb on + strandat 222.774 kb on + strandat 222.850 kb on + strand, within CA264_01020at 222.850 kb on + strand, within CA264_01020at 222.851 kb on - strand, within CA264_01020at 222.908 kb on - strand, within CA264_01020at 223.063 kb on - strand, within CA264_01020at 223.063 kb on - strand, within CA264_01020at 223.090 kb on - strand, within CA264_01020at 223.144 kb on + strand, within CA264_01020at 223.174 kb on + strand, within CA264_01020at 223.232 kb on - strand, within CA264_01020at 223.232 kb on - strand, within CA264_01020at 223.347 kb on + strand, within CA264_01020at 223.348 kb on - strand, within CA264_01020at 223.348 kb on - strand, within CA264_01020at 223.523 kb on + strand, within CA264_01020at 223.528 kb on + strand, within CA264_01020at 223.529 kb on - strand, within CA264_01020

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.08 mg/ml
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220,709 + CA264_01010 0.21 -0.5
220,802 - CA264_01010 0.29 +0.9
220,813 + CA264_01010 0.30 +0.0
220,889 + CA264_01010 0.37 +0.6
220,889 + CA264_01010 0.37 +1.2
220,890 - CA264_01010 0.37 +1.1
220,892 - CA264_01010 0.37 +0.0
220,895 - CA264_01010 0.37 +0.9
220,943 + CA264_01010 0.42 -0.9
220,943 + CA264_01010 0.42 -0.1
220,944 - CA264_01010 0.42 -1.0
220,944 - CA264_01010 0.42 -0.0
220,949 + CA264_01010 0.42 -0.8
220,955 + CA264_01010 0.43 +0.0
220,959 + CA264_01010 0.43 +0.5
221,082 + CA264_01010 0.54 -0.2
221,175 - CA264_01010 0.62 +1.2
221,178 + CA264_01010 0.62 -0.2
221,236 + CA264_01010 0.67 +2.0
221,236 + CA264_01010 0.67 +0.3
221,237 - CA264_01010 0.67 +0.8
221,268 - CA264_01010 0.70 +0.2
221,313 - CA264_01010 0.74 +0.2
221,334 + CA264_01010 0.76 +0.2
221,335 - CA264_01010 0.76 -0.6
221,335 - CA264_01010 0.76 +1.0
221,335 - CA264_01010 0.76 +1.0
221,379 - CA264_01010 0.80 -0.5
221,382 - CA264_01010 0.80 -1.1
221,389 + CA264_01010 0.80 -0.1
221,389 + CA264_01010 0.80 -1.2
221,392 + CA264_01010 0.81 -1.4
221,392 + CA264_01010 0.81 -0.9
221,393 - CA264_01010 0.81 +0.4
221,413 - CA264_01010 0.83 -0.2
221,413 - CA264_01010 0.83 +0.4
221,435 - CA264_01010 0.84 +0.7
221,443 + CA264_01010 0.85 +0.4
221,514 + -0.2
221,569 - +0.2
221,571 - +0.8
221,571 - -0.0
221,571 - -0.0
221,581 + -0.3
221,582 - -0.1
221,600 + -0.2
221,601 - +1.2
221,608 + -1.0
221,608 + +0.0
221,610 + +0.1
221,666 + -0.5
221,667 - +1.4
221,681 - +1.4
221,731 + +0.1
221,738 + -0.9
221,781 + CA264_01015 0.13 -0.7
221,782 - CA264_01015 0.13 +0.4
221,790 - CA264_01015 0.14 +0.1
221,790 - CA264_01015 0.14 +0.2
221,793 + CA264_01015 0.14 -0.7
221,794 - CA264_01015 0.15 +0.1
221,794 - CA264_01015 0.15 +1.0
221,794 - CA264_01015 0.15 +0.0
221,794 - CA264_01015 0.15 +0.6
221,803 - CA264_01015 0.16 +2.0
221,803 - CA264_01015 0.16 +0.7
221,813 + CA264_01015 0.17 +0.3
221,813 + CA264_01015 0.17 -0.9
221,928 + CA264_01015 0.29 -1.3
221,928 + CA264_01015 0.29 +2.0
222,005 - CA264_01015 0.37 +1.0
222,032 - CA264_01015 0.39 +1.4
222,036 - CA264_01015 0.40 +1.0
222,039 + CA264_01015 0.40 -0.6
222,039 + CA264_01015 0.40 +0.9
222,039 + CA264_01015 0.40 +0.3
222,040 - CA264_01015 0.40 +3.0
222,072 + CA264_01015 0.44 -0.5
222,073 - CA264_01015 0.44 +0.7
222,073 - CA264_01015 0.44 +0.3
222,216 + CA264_01015 0.59 +0.4
222,289 + CA264_01015 0.66 +0.8
222,290 - CA264_01015 0.66 +1.1
222,310 + CA264_01015 0.68 +0.5
222,349 + CA264_01015 0.72 -2.2
222,350 - CA264_01015 0.72 -0.4
222,364 - CA264_01015 0.74 +0.7
222,393 + CA264_01015 0.77 +0.3
222,434 + CA264_01015 0.81 -1.3
222,462 - CA264_01015 0.84 -0.4
222,462 - CA264_01015 0.84 +0.5
222,465 + CA264_01015 0.84 +0.9
222,466 - CA264_01015 0.85 +0.3
222,542 - +0.7
222,569 - +0.7
222,569 - +1.6
222,572 + +0.4
222,572 + +0.3
222,573 - +0.4
222,573 - -0.4
222,611 + -0.7
222,612 - +0.2
222,612 - +1.4
222,612 - +0.1
222,612 - -0.2
222,614 + +0.1
222,621 + +0.4
222,621 + +1.2
222,622 - -0.1
222,622 - +0.4
222,654 - +0.6
222,664 + +0.1
222,671 - -0.5
222,699 + +0.4
222,700 - +1.0
222,748 - -0.3
222,774 + -1.0
222,774 + -0.8
222,850 + CA264_01020 0.14 +0.4
222,850 + CA264_01020 0.14 -0.0
222,851 - CA264_01020 0.15 +0.3
222,908 - CA264_01020 0.20 +0.1
223,063 - CA264_01020 0.35 +0.3
223,063 - CA264_01020 0.35 -2.2
223,090 - CA264_01020 0.38 +0.7
223,144 + CA264_01020 0.43 +0.4
223,174 + CA264_01020 0.46 +0.7
223,232 - CA264_01020 0.51 -2.3
223,232 - CA264_01020 0.51 +1.0
223,347 + CA264_01020 0.63 -0.4
223,348 - CA264_01020 0.63 +0.3
223,348 - CA264_01020 0.63 +2.6
223,523 + CA264_01020 0.80 +0.1
223,528 + CA264_01020 0.80 -1.0
223,529 - CA264_01020 0.80 -1.8

Or see this region's nucleotide sequence