Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00975

Experiment: m.b. Spectinomycin 0.08 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00970 and CA264_00975 are separated by 252 nucleotidesCA264_00975 and CA264_00980 are separated by 87 nucleotides CA264_00970: CA264_00970 - capsular biosynthesis protein, at 208,940 to 211,264 _00970 CA264_00975: CA264_00975 - NAD-dependent epimerase, at 211,517 to 212,617 _00975 CA264_00980: CA264_00980 - polysaccharide biosynthesis protein, at 212,705 to 214,258 _00980 Position (kb) 211 212 213Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 210.524 kb on + strand, within CA264_00970at 210.554 kb on - strand, within CA264_00970at 210.554 kb on - strand, within CA264_00970at 210.554 kb on - strand, within CA264_00970at 210.579 kb on + strand, within CA264_00970at 210.789 kb on - strand, within CA264_00970at 210.789 kb on - strand, within CA264_00970at 210.790 kb on + strand, within CA264_00970at 210.791 kb on - strand, within CA264_00970at 210.891 kb on - strand, within CA264_00970at 210.891 kb on - strand, within CA264_00970at 210.982 kb on - strand, within CA264_00970at 211.017 kb on - strand, within CA264_00970at 211.031 kb on + strand, within CA264_00970at 211.067 kb on + strandat 211.068 kb on - strandat 211.069 kb on + strandat 211.194 kb on - strandat 211.218 kb on - strandat 211.232 kb on + strandat 211.256 kb on - strandat 211.318 kb on + strandat 211.320 kb on + strandat 211.468 kb on + strandat 211.479 kb on + strandat 211.493 kb on - strandat 211.497 kb on - strandat 211.503 kb on + strandat 211.597 kb on - strandat 211.597 kb on - strandat 211.625 kb on + strandat 211.626 kb on - strandat 211.682 kb on - strand, within CA264_00975at 211.832 kb on + strand, within CA264_00975at 211.840 kb on + strand, within CA264_00975at 211.910 kb on - strand, within CA264_00975at 212.015 kb on + strand, within CA264_00975at 212.015 kb on + strand, within CA264_00975at 212.016 kb on - strand, within CA264_00975at 212.053 kb on + strand, within CA264_00975at 212.053 kb on + strand, within CA264_00975at 212.053 kb on + strand, within CA264_00975at 212.054 kb on - strand, within CA264_00975at 212.054 kb on - strand, within CA264_00975at 212.069 kb on + strand, within CA264_00975at 212.070 kb on - strand, within CA264_00975at 212.071 kb on + strand, within CA264_00975at 212.071 kb on + strand, within CA264_00975at 212.072 kb on - strand, within CA264_00975at 212.077 kb on - strand, within CA264_00975at 212.108 kb on + strand, within CA264_00975at 212.138 kb on + strand, within CA264_00975at 212.139 kb on - strand, within CA264_00975at 212.219 kb on + strand, within CA264_00975at 212.220 kb on - strand, within CA264_00975at 212.220 kb on - strand, within CA264_00975at 212.220 kb on - strand, within CA264_00975at 212.220 kb on - strand, within CA264_00975at 212.220 kb on - strand, within CA264_00975at 212.221 kb on + strand, within CA264_00975at 212.221 kb on + strand, within CA264_00975at 212.221 kb on + strand, within CA264_00975at 212.222 kb on - strand, within CA264_00975at 212.222 kb on - strand, within CA264_00975at 212.222 kb on - strand, within CA264_00975at 212.224 kb on - strand, within CA264_00975at 212.224 kb on - strand, within CA264_00975at 212.224 kb on - strand, within CA264_00975at 212.328 kb on - strand, within CA264_00975at 212.328 kb on - strand, within CA264_00975at 212.332 kb on + strand, within CA264_00975at 212.332 kb on + strand, within CA264_00975at 212.332 kb on + strand, within CA264_00975at 212.338 kb on + strand, within CA264_00975at 212.378 kb on - strand, within CA264_00975at 212.378 kb on - strand, within CA264_00975at 212.422 kb on + strand, within CA264_00975at 212.478 kb on + strand, within CA264_00975at 212.478 kb on + strand, within CA264_00975at 212.495 kb on + strand, within CA264_00975at 212.496 kb on - strand, within CA264_00975at 212.546 kb on + strandat 212.546 kb on + strandat 212.555 kb on + strandat 212.585 kb on + strandat 212.586 kb on - strandat 212.586 kb on - strandat 212.589 kb on + strandat 212.698 kb on + strandat 212.721 kb on + strandat 212.788 kb on + strandat 212.821 kb on + strandat 212.837 kb on - strandat 212.901 kb on - strand, within CA264_00980at 212.917 kb on + strand, within CA264_00980at 212.917 kb on + strand, within CA264_00980at 212.918 kb on - strand, within CA264_00980at 212.937 kb on + strand, within CA264_00980at 212.938 kb on - strand, within CA264_00980at 212.938 kb on - strand, within CA264_00980at 212.947 kb on + strand, within CA264_00980at 212.948 kb on - strand, within CA264_00980at 212.956 kb on + strand, within CA264_00980at 212.956 kb on + strand, within CA264_00980at 212.956 kb on + strand, within CA264_00980at 212.956 kb on + strand, within CA264_00980at 212.986 kb on - strand, within CA264_00980at 213.017 kb on - strand, within CA264_00980at 213.069 kb on - strand, within CA264_00980at 213.079 kb on + strand, within CA264_00980at 213.109 kb on + strand, within CA264_00980at 213.166 kb on + strand, within CA264_00980at 213.167 kb on - strand, within CA264_00980at 213.237 kb on + strand, within CA264_00980at 213.270 kb on + strand, within CA264_00980at 213.344 kb on + strand, within CA264_00980at 213.354 kb on + strand, within CA264_00980at 213.355 kb on - strand, within CA264_00980at 213.443 kb on + strand, within CA264_00980at 213.444 kb on - strand, within CA264_00980at 213.444 kb on - strand, within CA264_00980at 213.524 kb on + strand, within CA264_00980at 213.525 kb on - strand, within CA264_00980at 213.553 kb on + strand, within CA264_00980at 213.556 kb on - strand, within CA264_00980at 213.568 kb on - strand, within CA264_00980

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.08 mg/ml
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210,524 + CA264_00970 0.68 +1.0
210,554 - CA264_00970 0.69 +0.7
210,554 - CA264_00970 0.69 -1.6
210,554 - CA264_00970 0.69 -0.2
210,579 + CA264_00970 0.70 -1.0
210,789 - CA264_00970 0.80 +0.1
210,789 - CA264_00970 0.80 -0.1
210,790 + CA264_00970 0.80 -1.8
210,791 - CA264_00970 0.80 -0.1
210,891 - CA264_00970 0.84 -1.0
210,891 - CA264_00970 0.84 -1.0
210,982 - CA264_00970 0.88 -0.6
211,017 - CA264_00970 0.89 +1.4
211,031 + CA264_00970 0.90 -0.7
211,067 + -1.1
211,068 - -1.4
211,069 + +0.0
211,194 - -0.4
211,218 - -1.7
211,232 + +2.0
211,256 - -0.7
211,318 + -0.8
211,320 + +1.6
211,468 + -0.7
211,479 + +0.6
211,493 - +0.1
211,497 - -1.7
211,503 + +2.0
211,597 - -0.3
211,597 - +0.2
211,625 + -0.6
211,626 - -0.3
211,682 - CA264_00975 0.15 -1.2
211,832 + CA264_00975 0.29 -0.6
211,840 + CA264_00975 0.29 -0.3
211,910 - CA264_00975 0.36 -1.2
212,015 + CA264_00975 0.45 -0.2
212,015 + CA264_00975 0.45 -1.3
212,016 - CA264_00975 0.45 -0.8
212,053 + CA264_00975 0.49 -1.2
212,053 + CA264_00975 0.49 -1.0
212,053 + CA264_00975 0.49 +0.8
212,054 - CA264_00975 0.49 -0.7
212,054 - CA264_00975 0.49 -1.4
212,069 + CA264_00975 0.50 -0.2
212,070 - CA264_00975 0.50 -0.4
212,071 + CA264_00975 0.50 -0.4
212,071 + CA264_00975 0.50 -0.2
212,072 - CA264_00975 0.50 -0.6
212,077 - CA264_00975 0.51 -1.3
212,108 + CA264_00975 0.54 -0.6
212,138 + CA264_00975 0.56 -1.1
212,139 - CA264_00975 0.56 +0.0
212,219 + CA264_00975 0.64 -1.2
212,220 - CA264_00975 0.64 +2.0
212,220 - CA264_00975 0.64 +1.0
212,220 - CA264_00975 0.64 -0.7
212,220 - CA264_00975 0.64 -1.0
212,220 - CA264_00975 0.64 +0.3
212,221 + CA264_00975 0.64 -0.3
212,221 + CA264_00975 0.64 +0.8
212,221 + CA264_00975 0.64 -0.8
212,222 - CA264_00975 0.64 -1.9
212,222 - CA264_00975 0.64 -0.6
212,222 - CA264_00975 0.64 -1.0
212,224 - CA264_00975 0.64 +0.2
212,224 - CA264_00975 0.64 -0.8
212,224 - CA264_00975 0.64 -0.0
212,328 - CA264_00975 0.74 +2.0
212,328 - CA264_00975 0.74 +0.6
212,332 + CA264_00975 0.74 -0.2
212,332 + CA264_00975 0.74 -0.8
212,332 + CA264_00975 0.74 -0.7
212,338 + CA264_00975 0.75 -0.3
212,378 - CA264_00975 0.78 -0.2
212,378 - CA264_00975 0.78 -0.6
212,422 + CA264_00975 0.82 -1.3
212,478 + CA264_00975 0.87 +0.3
212,478 + CA264_00975 0.87 -0.7
212,495 + CA264_00975 0.89 -0.4
212,496 - CA264_00975 0.89 -0.1
212,546 + -0.8
212,546 + -0.6
212,555 + -0.1
212,585 + -0.6
212,586 - +2.0
212,586 - +0.3
212,589 + -1.3
212,698 + -3.2
212,721 + +0.0
212,788 + -1.2
212,821 + -0.5
212,837 - -0.3
212,901 - CA264_00980 0.13 -0.1
212,917 + CA264_00980 0.14 -0.1
212,917 + CA264_00980 0.14 -0.3
212,918 - CA264_00980 0.14 +1.4
212,937 + CA264_00980 0.15 -0.2
212,938 - CA264_00980 0.15 -0.3
212,938 - CA264_00980 0.15 +0.2
212,947 + CA264_00980 0.16 -0.3
212,948 - CA264_00980 0.16 -0.1
212,956 + CA264_00980 0.16 +0.2
212,956 + CA264_00980 0.16 -0.3
212,956 + CA264_00980 0.16 -0.6
212,956 + CA264_00980 0.16 +1.3
212,986 - CA264_00980 0.18 -0.3
213,017 - CA264_00980 0.20 +1.2
213,069 - CA264_00980 0.23 +0.0
213,079 + CA264_00980 0.24 +0.0
213,109 + CA264_00980 0.26 -0.3
213,166 + CA264_00980 0.30 -1.4
213,167 - CA264_00980 0.30 -0.7
213,237 + CA264_00980 0.34 -1.6
213,270 + CA264_00980 0.36 -0.2
213,344 + CA264_00980 0.41 -0.1
213,354 + CA264_00980 0.42 -1.9
213,355 - CA264_00980 0.42 +0.9
213,443 + CA264_00980 0.47 -0.0
213,444 - CA264_00980 0.48 +0.4
213,444 - CA264_00980 0.48 +0.8
213,524 + CA264_00980 0.53 +0.4
213,525 - CA264_00980 0.53 +2.3
213,553 + CA264_00980 0.55 -0.4
213,556 - CA264_00980 0.55 -0.6
213,568 - CA264_00980 0.56 +0.8

Or see this region's nucleotide sequence