Experiment: m.b. Spectinomycin 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00925 and CA264_00930 are separated by 210 nucleotides CA264_00930 and CA264_00935 are separated by 103 nucleotides CA264_00935 and CA264_00940 are separated by 127 nucleotides CA264_00940 and CA264_00945 are separated by 89 nucleotides
CA264_00925: CA264_00925 - hypothetical protein, at 198,009 to 198,977
_00925
CA264_00930: CA264_00930 - phosphorylase, at 199,188 to 200,045
_00930
CA264_00935: CA264_00935 - hypothetical protein, at 200,149 to 200,448
_00935
CA264_00940: CA264_00940 - hypothetical protein, at 200,576 to 200,875
_00940
CA264_00945: CA264_00945 - acyl-CoA reductase, at 200,965 to 201,975
_00945
Position (kb) 199
200
201 Strain fitness (log2 ratio) -2
-1
0
1
2 at 198.264 kb on - strand, within CA264_00925 at 198.365 kb on + strand, within CA264_00925 at 198.397 kb on + strand, within CA264_00925 at 198.513 kb on + strand, within CA264_00925 at 198.514 kb on - strand, within CA264_00925 at 198.515 kb on + strand, within CA264_00925 at 198.606 kb on + strand, within CA264_00925 at 198.606 kb on + strand, within CA264_00925 at 198.634 kb on - strand, within CA264_00925 at 198.676 kb on - strand, within CA264_00925 at 198.676 kb on - strand, within CA264_00925 at 198.676 kb on - strand, within CA264_00925 at 198.676 kb on - strand, within CA264_00925 at 198.886 kb on - strand at 198.967 kb on + strand at 198.973 kb on + strand at 198.973 kb on + strand at 198.974 kb on - strand at 198.975 kb on + strand at 198.979 kb on + strand at 198.980 kb on - strand at 199.049 kb on - strand at 199.049 kb on - strand at 199.137 kb on + strand at 199.138 kb on - strand at 199.194 kb on - strand at 199.194 kb on - strand at 199.217 kb on + strand at 199.384 kb on - strand, within CA264_00930 at 199.384 kb on - strand, within CA264_00930 at 199.385 kb on + strand, within CA264_00930 at 199.386 kb on - strand, within CA264_00930 at 199.656 kb on - strand, within CA264_00930 at 199.658 kb on - strand, within CA264_00930 at 199.701 kb on + strand, within CA264_00930 at 199.739 kb on - strand, within CA264_00930 at 199.769 kb on + strand, within CA264_00930 at 199.769 kb on + strand, within CA264_00930 at 199.770 kb on - strand, within CA264_00930 at 199.846 kb on - strand, within CA264_00930 at 199.846 kb on - strand, within CA264_00930 at 199.846 kb on - strand, within CA264_00930 at 199.878 kb on - strand, within CA264_00930 at 199.908 kb on + strand, within CA264_00930 at 199.955 kb on + strand, within CA264_00930 at 199.961 kb on - strand at 200.086 kb on + strand at 200.087 kb on - strand at 200.135 kb on + strand at 200.157 kb on - strand at 200.157 kb on - strand at 200.157 kb on - strand at 200.253 kb on + strand, within CA264_00935 at 200.336 kb on + strand, within CA264_00935 at 200.336 kb on + strand, within CA264_00935 at 200.472 kb on + strand at 200.474 kb on + strand at 200.475 kb on - strand at 200.475 kb on - strand at 200.476 kb on + strand at 200.578 kb on - strand at 200.600 kb on - strand at 200.767 kb on + strand, within CA264_00940 at 200.767 kb on + strand, within CA264_00940 at 200.887 kb on + strand at 200.915 kb on + strand at 200.959 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.08 mg/ml remove 198,264 - CA264_00925 0.26 +0.1 198,365 + CA264_00925 0.37 -1.0 198,397 + CA264_00925 0.40 -0.4 198,513 + CA264_00925 0.52 -1.0 198,514 - CA264_00925 0.52 +0.3 198,515 + CA264_00925 0.52 +0.3 198,606 + CA264_00925 0.62 -1.5 198,606 + CA264_00925 0.62 -1.8 198,634 - CA264_00925 0.64 +0.3 198,676 - CA264_00925 0.69 +0.2 198,676 - CA264_00925 0.69 +0.0 198,676 - CA264_00925 0.69 +0.1 198,676 - CA264_00925 0.69 +1.6 198,886 - -1.0 198,967 + +0.5 198,973 + -0.4 198,973 + -0.8 198,974 - +0.6 198,975 + -0.4 198,979 + +0.0 198,980 - -0.3 199,049 - -0.1 199,049 - +0.3 199,137 + -0.3 199,138 - -0.2 199,194 - +0.7 199,194 - +1.0 199,217 + +0.0 199,384 - CA264_00930 0.23 -0.8 199,384 - CA264_00930 0.23 +0.7 199,385 + CA264_00930 0.23 -1.6 199,386 - CA264_00930 0.23 +0.3 199,656 - CA264_00930 0.55 -0.3 199,658 - CA264_00930 0.55 +1.5 199,701 + CA264_00930 0.60 +0.0 199,739 - CA264_00930 0.64 -0.6 199,769 + CA264_00930 0.68 -0.3 199,769 + CA264_00930 0.68 -1.0 199,770 - CA264_00930 0.68 -0.4 199,846 - CA264_00930 0.77 +1.2 199,846 - CA264_00930 0.77 +0.4 199,846 - CA264_00930 0.77 +0.4 199,878 - CA264_00930 0.80 -1.3 199,908 + CA264_00930 0.84 +2.3 199,955 + CA264_00930 0.89 -0.2 199,961 - +1.6 200,086 + -1.8 200,087 - -0.4 200,135 + -0.8 200,157 - +2.3 200,157 - +0.2 200,157 - -1.0 200,253 + CA264_00935 0.35 -0.5 200,336 + CA264_00935 0.62 +1.0 200,336 + CA264_00935 0.62 -0.2 200,472 + +0.6 200,474 + -0.3 200,475 - +0.8 200,475 - -0.4 200,476 + -0.7 200,578 - -0.1 200,600 - +0.2 200,767 + CA264_00940 0.64 -1.1 200,767 + CA264_00940 0.64 -1.1 200,887 + -0.4 200,915 + -0.2 200,959 - +0.1
Or see this region's nucleotide sequence