Experiment: m.b. Spectinomycin 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00880 and CA264_00885 are separated by 373 nucleotides
CA264_00880: CA264_00880 - orotidine 5'-phosphate decarboxylase, at 188,868 to 189,695
_00880
CA264_00885: CA264_00885 - hypothetical protein, at 190,069 to 190,440
_00885
Position (kb) 190
191 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 189.232 kb on - strand, within CA264_00880 at 189.361 kb on - strand, within CA264_00880 at 189.421 kb on - strand, within CA264_00880 at 189.448 kb on - strand, within CA264_00880 at 189.594 kb on + strand, within CA264_00880 at 189.594 kb on + strand, within CA264_00880 at 189.595 kb on - strand, within CA264_00880 at 189.699 kb on + strand at 189.699 kb on + strand at 189.699 kb on + strand at 189.699 kb on + strand at 189.700 kb on - strand at 189.714 kb on - strand at 189.773 kb on + strand at 189.774 kb on - strand at 189.774 kb on - strand at 189.779 kb on + strand at 189.779 kb on + strand at 189.779 kb on + strand at 189.782 kb on + strand at 189.783 kb on - strand at 189.792 kb on - strand at 189.798 kb on + strand at 189.798 kb on + strand at 189.911 kb on + strand at 189.912 kb on - strand at 189.921 kb on + strand at 189.982 kb on + strand at 189.982 kb on + strand at 189.983 kb on - strand at 189.983 kb on - strand at 189.989 kb on + strand at 190.047 kb on + strand at 190.047 kb on + strand at 190.048 kb on - strand at 190.048 kb on - strand at 190.048 kb on - strand at 190.052 kb on - strand at 190.063 kb on + strand at 190.097 kb on + strand at 190.098 kb on - strand at 190.099 kb on + strand at 190.100 kb on - strand at 190.102 kb on - strand at 190.122 kb on + strand, within CA264_00885 at 190.123 kb on - strand, within CA264_00885 at 190.137 kb on - strand, within CA264_00885 at 190.152 kb on - strand, within CA264_00885 at 190.157 kb on + strand, within CA264_00885 at 190.158 kb on - strand, within CA264_00885 at 190.194 kb on + strand, within CA264_00885 at 190.197 kb on + strand, within CA264_00885 at 190.250 kb on - strand, within CA264_00885 at 190.251 kb on + strand, within CA264_00885 at 190.324 kb on + strand, within CA264_00885 at 190.326 kb on + strand, within CA264_00885 at 190.338 kb on + strand, within CA264_00885 at 190.338 kb on + strand, within CA264_00885 at 190.346 kb on + strand, within CA264_00885 at 190.347 kb on - strand, within CA264_00885 at 190.347 kb on - strand, within CA264_00885 at 190.357 kb on + strand, within CA264_00885 at 190.364 kb on - strand, within CA264_00885 at 190.369 kb on - strand, within CA264_00885 at 190.380 kb on - strand, within CA264_00885 at 190.384 kb on - strand, within CA264_00885 at 190.410 kb on - strand at 190.416 kb on - strand at 190.416 kb on - strand at 190.416 kb on - strand at 190.421 kb on + strand at 190.492 kb on + strand at 190.503 kb on - strand at 190.551 kb on + strand at 190.551 kb on + strand at 190.556 kb on + strand at 190.556 kb on + strand at 190.557 kb on - strand at 190.576 kb on + strand at 190.612 kb on + strand at 190.612 kb on + strand at 190.631 kb on + strand at 190.855 kb on - strand at 190.867 kb on - strand at 190.921 kb on + strand at 190.979 kb on - strand at 190.982 kb on - strand at 191.203 kb on + strand at 191.204 kb on - strand at 191.280 kb on - strand at 191.280 kb on - strand at 191.281 kb on + strand at 191.281 kb on + strand at 191.282 kb on - strand at 191.282 kb on - strand at 191.297 kb on - strand at 191.302 kb on + strand at 191.303 kb on - strand at 191.310 kb on + strand at 191.348 kb on + strand at 191.349 kb on - strand at 191.355 kb on + strand at 191.417 kb on - strand at 191.436 kb on + strand at 191.436 kb on + strand at 191.436 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.08 mg/ml remove 189,232 - CA264_00880 0.44 -0.5 189,361 - CA264_00880 0.60 -1.0 189,421 - CA264_00880 0.67 +0.3 189,448 - CA264_00880 0.70 -0.5 189,594 + CA264_00880 0.88 -0.3 189,594 + CA264_00880 0.88 -3.2 189,595 - CA264_00880 0.88 -0.8 189,699 + +0.9 189,699 + -0.6 189,699 + -0.6 189,699 + +0.4 189,700 - +0.2 189,714 - -0.1 189,773 + +1.8 189,774 - -1.0 189,774 - +0.9 189,779 + +0.3 189,779 + +0.7 189,779 + -1.0 189,782 + +0.4 189,783 - -0.7 189,792 - +0.0 189,798 + +0.7 189,798 + +1.8 189,911 + +0.9 189,912 - -0.1 189,921 + +0.3 189,982 + +0.1 189,982 + -0.1 189,983 - -0.1 189,983 - +0.1 189,989 + +0.4 190,047 + -0.2 190,047 + -0.6 190,048 - +1.0 190,048 - +0.3 190,048 - -0.6 190,052 - -0.2 190,063 + +0.5 190,097 + -0.6 190,098 - +0.4 190,099 + +0.2 190,100 - +1.2 190,102 - -0.2 190,122 + CA264_00885 0.14 +1.0 190,123 - CA264_00885 0.15 +0.5 190,137 - CA264_00885 0.18 -0.5 190,152 - CA264_00885 0.22 -0.1 190,157 + CA264_00885 0.24 -0.2 190,158 - CA264_00885 0.24 +0.9 190,194 + CA264_00885 0.34 -0.5 190,197 + CA264_00885 0.34 +0.4 190,250 - CA264_00885 0.49 +1.1 190,251 + CA264_00885 0.49 +0.8 190,324 + CA264_00885 0.69 -0.3 190,326 + CA264_00885 0.69 +1.8 190,338 + CA264_00885 0.72 +0.1 190,338 + CA264_00885 0.72 +1.0 190,346 + CA264_00885 0.74 -1.0 190,347 - CA264_00885 0.75 -0.8 190,347 - CA264_00885 0.75 +0.2 190,357 + CA264_00885 0.77 -0.0 190,364 - CA264_00885 0.79 -0.2 190,369 - CA264_00885 0.81 -0.9 190,380 - CA264_00885 0.84 +0.1 190,384 - CA264_00885 0.85 +0.6 190,410 - +1.0 190,416 - +0.8 190,416 - +0.3 190,416 - -0.2 190,421 + -0.2 190,492 + +0.1 190,503 - +2.3 190,551 + -1.4 190,551 + -1.3 190,556 + +0.5 190,556 + +0.0 190,557 - +0.6 190,576 + +0.2 190,612 + +1.6 190,612 + +0.3 190,631 + +0.8 190,855 - +1.0 190,867 - -0.1 190,921 + -1.2 190,979 - +0.4 190,982 - +0.4 191,203 + +0.3 191,204 - +0.2 191,280 - +1.0 191,280 - +1.0 191,281 + +0.0 191,281 + -0.5 191,282 - +1.4 191,282 - +0.0 191,297 - +1.8 191,302 + -0.1 191,303 - +0.8 191,310 + -0.4 191,348 + -0.8 191,349 - +0.4 191,355 + +0.4 191,417 - +0.6 191,436 + -0.1 191,436 + -0.2 191,436 + -0.1
Or see this region's nucleotide sequence