Experiment: m.b. Spectinomycin 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00715 and CA264_00720 are separated by 195 nucleotides CA264_00720 and CA264_00725 are separated by 391 nucleotides CA264_00725 and CA264_00730 are separated by 2 nucleotides CA264_00730 and CA264_00735 are separated by 153 nucleotides CA264_00735 and CA264_00740 are separated by 59 nucleotides
CA264_00715: CA264_00715 - hypothetical protein, at 154,645 to 155,742
_00715
CA264_00720: CA264_00720 - 30S ribosomal protein S20, at 155,938 to 156,195
_00720
CA264_00725: CA264_00725 - pyruvate kinase, at 156,587 to 158,014
_00725
CA264_00730: CA264_00730 - hypothetical protein, at 158,017 to 158,445
_00730
CA264_00735: CA264_00735 - acyl carrier protein, at 158,599 to 158,835
_00735
CA264_00740: CA264_00740 - beta-ketoacyl-[acyl-carrier-protein] synthase II, at 158,895 to 160,148
_00740
Position (kb) 156
157
158
159 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 155.598 kb on + strand, within CA264_00715 at 155.598 kb on + strand, within CA264_00715 at 155.598 kb on + strand, within CA264_00715 at 155.659 kb on + strand at 155.727 kb on - strand at 155.730 kb on + strand at 155.743 kb on - strand at 155.788 kb on - strand at 155.822 kb on + strand at 155.822 kb on + strand at 155.823 kb on - strand at 156.193 kb on + strand at 156.230 kb on + strand at 156.277 kb on + strand at 156.283 kb on + strand at 156.284 kb on - strand at 156.330 kb on + strand at 156.401 kb on - strand at 156.413 kb on + strand at 156.414 kb on - strand at 156.414 kb on - strand at 156.417 kb on + strand at 156.418 kb on - strand at 156.424 kb on + strand at 156.506 kb on - strand at 156.516 kb on - strand at 156.519 kb on - strand at 156.520 kb on + strand at 156.521 kb on - strand at 156.521 kb on - strand at 156.564 kb on + strand at 156.569 kb on + strand at 156.570 kb on - strand at 156.570 kb on - strand at 156.570 kb on - strand at 156.599 kb on + strand at 156.599 kb on + strand at 156.600 kb on - strand at 156.673 kb on + strand at 156.673 kb on + strand at 156.674 kb on - strand at 156.679 kb on - strand at 156.949 kb on + strand, within CA264_00725 at 156.987 kb on - strand, within CA264_00725 at 157.005 kb on - strand, within CA264_00725 at 157.257 kb on - strand, within CA264_00725 at 157.659 kb on - strand, within CA264_00725 at 157.748 kb on + strand, within CA264_00725 at 157.752 kb on - strand, within CA264_00725 at 157.920 kb on - strand at 157.973 kb on + strand at 158.014 kb on + strand at 158.015 kb on - strand at 158.018 kb on + strand at 158.019 kb on - strand at 158.037 kb on + strand at 158.068 kb on + strand, within CA264_00730 at 158.156 kb on + strand, within CA264_00730 at 158.170 kb on + strand, within CA264_00730 at 158.256 kb on + strand, within CA264_00730 at 158.256 kb on + strand, within CA264_00730 at 158.258 kb on + strand, within CA264_00730 at 158.264 kb on + strand, within CA264_00730 at 158.264 kb on + strand, within CA264_00730 at 158.417 kb on + strand at 158.417 kb on + strand at 158.463 kb on + strand at 158.468 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.08 mg/ml remove 155,598 + CA264_00715 0.87 +1.0 155,598 + CA264_00715 0.87 -0.6 155,598 + CA264_00715 0.87 +0.0 155,659 + +0.4 155,727 - +2.8 155,730 + +0.0 155,743 - +0.3 155,788 - +1.1 155,822 + +1.4 155,822 + +0.4 155,823 - +0.1 156,193 + +0.7 156,230 + +1.2 156,277 + -0.1 156,283 + +0.2 156,284 - -0.8 156,330 + -2.4 156,401 - -1.6 156,413 + -0.4 156,414 - -0.6 156,414 - -2.4 156,417 + -0.2 156,418 - -0.4 156,424 + -0.8 156,506 - -1.0 156,516 - -1.0 156,519 - -0.6 156,520 + +0.4 156,521 - -1.3 156,521 - +0.0 156,564 + +1.1 156,569 + +1.8 156,570 - -0.1 156,570 - -1.4 156,570 - +0.0 156,599 + +0.1 156,599 + -0.5 156,600 - -1.0 156,673 + -1.6 156,673 + +0.4 156,674 - -0.6 156,679 - -0.5 156,949 + CA264_00725 0.25 +0.4 156,987 - CA264_00725 0.28 -1.3 157,005 - CA264_00725 0.29 -1.4 157,257 - CA264_00725 0.47 +1.5 157,659 - CA264_00725 0.75 -0.7 157,748 + CA264_00725 0.81 +1.0 157,752 - CA264_00725 0.82 -0.0 157,920 - -0.3 157,973 + +0.6 158,014 + +1.3 158,015 - -0.5 158,018 + +0.1 158,019 - -0.1 158,037 + +0.8 158,068 + CA264_00730 0.12 -1.3 158,156 + CA264_00730 0.32 +1.0 158,170 + CA264_00730 0.36 +0.6 158,256 + CA264_00730 0.56 +1.6 158,256 + CA264_00730 0.56 +2.0 158,258 + CA264_00730 0.56 +0.6 158,264 + CA264_00730 0.58 +0.0 158,264 + CA264_00730 0.58 +2.6 158,417 + +1.0 158,417 + +2.6 158,463 + +2.7 158,468 + +1.7
Or see this region's nucleotide sequence