Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00655

Experiment: m.b. Spectinomycin 0.08 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00650 and CA264_00655 are separated by 107 nucleotidesCA264_00655 and CA264_00660 are separated by 300 nucleotides CA264_00650: CA264_00650 - permease, at 143,087 to 144,163 _00650 CA264_00655: CA264_00655 - tRNA-guanine(34) transglycosylase, at 144,271 to 145,401 _00655 CA264_00660: CA264_00660 - hypothetical protein, at 145,702 to 146,778 _00660 Position (kb) 144 145 146Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 144.171 kb on - strandat 144.175 kb on - strandat 144.216 kb on - strandat 144.269 kb on - strandat 144.272 kb on + strandat 144.355 kb on + strandat 144.381 kb on + strandat 144.440 kb on + strand, within CA264_00655at 144.451 kb on - strand, within CA264_00655at 144.451 kb on - strand, within CA264_00655at 144.452 kb on + strand, within CA264_00655at 144.453 kb on - strand, within CA264_00655at 144.467 kb on + strand, within CA264_00655at 144.531 kb on + strand, within CA264_00655at 144.597 kb on + strand, within CA264_00655at 144.598 kb on - strand, within CA264_00655at 144.657 kb on - strand, within CA264_00655at 144.707 kb on + strand, within CA264_00655at 144.707 kb on + strand, within CA264_00655at 144.708 kb on - strand, within CA264_00655at 144.809 kb on + strand, within CA264_00655at 144.810 kb on - strand, within CA264_00655at 144.810 kb on - strand, within CA264_00655at 144.854 kb on + strand, within CA264_00655at 144.854 kb on + strand, within CA264_00655at 144.919 kb on - strand, within CA264_00655at 145.038 kb on + strand, within CA264_00655at 145.109 kb on - strand, within CA264_00655at 145.109 kb on - strand, within CA264_00655at 145.135 kb on + strand, within CA264_00655at 145.136 kb on - strand, within CA264_00655at 145.136 kb on - strand, within CA264_00655at 145.208 kb on + strand, within CA264_00655at 145.209 kb on - strand, within CA264_00655at 145.210 kb on + strand, within CA264_00655at 145.210 kb on + strand, within CA264_00655at 145.211 kb on - strand, within CA264_00655at 145.218 kb on - strand, within CA264_00655at 145.308 kb on + strandat 145.407 kb on + strandat 145.408 kb on - strandat 145.470 kb on + strandat 145.471 kb on - strandat 145.511 kb on - strandat 145.511 kb on - strandat 145.517 kb on + strandat 145.572 kb on + strandat 145.573 kb on - strandat 145.575 kb on - strandat 145.575 kb on - strandat 145.583 kb on + strandat 145.638 kb on - strandat 145.638 kb on - strandat 145.673 kb on - strandat 145.673 kb on - strandat 145.687 kb on - strandat 145.687 kb on - strandat 145.728 kb on - strandat 145.728 kb on - strandat 145.729 kb on + strandat 145.730 kb on - strandat 145.931 kb on - strand, within CA264_00660at 145.931 kb on - strand, within CA264_00660at 145.931 kb on - strand, within CA264_00660at 145.931 kb on - strand, within CA264_00660at 145.937 kb on - strand, within CA264_00660at 145.937 kb on - strand, within CA264_00660at 145.937 kb on - strand, within CA264_00660at 146.123 kb on - strand, within CA264_00660at 146.258 kb on - strand, within CA264_00660at 146.285 kb on - strand, within CA264_00660at 146.285 kb on - strand, within CA264_00660at 146.285 kb on - strand, within CA264_00660at 146.337 kb on - strand, within CA264_00660at 146.383 kb on - strand, within CA264_00660at 146.383 kb on - strand, within CA264_00660at 146.392 kb on - strand, within CA264_00660at 146.395 kb on - strand, within CA264_00660at 146.395 kb on - strand, within CA264_00660at 146.395 kb on - strand, within CA264_00660

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.08 mg/ml
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144,171 - +1.4
144,175 - +0.5
144,216 - +0.7
144,269 - +0.9
144,272 + +0.0
144,355 + -3.5
144,381 + +1.0
144,440 + CA264_00655 0.15 -2.3
144,451 - CA264_00655 0.16 -1.3
144,451 - CA264_00655 0.16 -2.3
144,452 + CA264_00655 0.16 -0.6
144,453 - CA264_00655 0.16 -1.7
144,467 + CA264_00655 0.17 -2.3
144,531 + CA264_00655 0.23 -2.3
144,597 + CA264_00655 0.29 -0.3
144,598 - CA264_00655 0.29 -0.6
144,657 - CA264_00655 0.34 -1.6
144,707 + CA264_00655 0.39 -2.7
144,707 + CA264_00655 0.39 -2.0
144,708 - CA264_00655 0.39 -0.9
144,809 + CA264_00655 0.48 -0.6
144,810 - CA264_00655 0.48 -0.9
144,810 - CA264_00655 0.48 +1.0
144,854 + CA264_00655 0.52 -1.3
144,854 + CA264_00655 0.52 -3.0
144,919 - CA264_00655 0.57 -0.6
145,038 + CA264_00655 0.68 -2.0
145,109 - CA264_00655 0.74 -2.0
145,109 - CA264_00655 0.74 -1.0
145,135 + CA264_00655 0.76 -1.1
145,136 - CA264_00655 0.76 -1.0
145,136 - CA264_00655 0.76 -0.4
145,208 + CA264_00655 0.83 -2.0
145,209 - CA264_00655 0.83 -2.6
145,210 + CA264_00655 0.83 -1.1
145,210 + CA264_00655 0.83 -1.8
145,211 - CA264_00655 0.83 -0.6
145,218 - CA264_00655 0.84 -0.8
145,308 + -2.4
145,407 + -2.7
145,408 - -0.8
145,470 + -2.0
145,471 - -0.2
145,511 - +1.0
145,511 - -2.1
145,517 + -2.4
145,572 + +2.0
145,573 - +0.1
145,575 - -1.2
145,575 - -0.8
145,583 + -1.0
145,638 - -1.0
145,638 - -0.6
145,673 - +1.7
145,673 - -0.6
145,687 - +1.9
145,687 - +2.7
145,728 - +0.4
145,728 - +1.0
145,729 + -3.0
145,730 - +2.6
145,931 - CA264_00660 0.21 +2.2
145,931 - CA264_00660 0.21 +2.5
145,931 - CA264_00660 0.21 +2.4
145,931 - CA264_00660 0.21 +1.8
145,937 - CA264_00660 0.22 +1.5
145,937 - CA264_00660 0.22 +2.8
145,937 - CA264_00660 0.22 +2.1
146,123 - CA264_00660 0.39 +2.2
146,258 - CA264_00660 0.52 +2.1
146,285 - CA264_00660 0.54 +2.9
146,285 - CA264_00660 0.54 +2.5
146,285 - CA264_00660 0.54 +2.1
146,337 - CA264_00660 0.59 +0.0
146,383 - CA264_00660 0.63 +2.3
146,383 - CA264_00660 0.63 +1.6
146,392 - CA264_00660 0.64 +3.8
146,395 - CA264_00660 0.64 +2.7
146,395 - CA264_00660 0.64 +2.5
146,395 - CA264_00660 0.64 +2.7

Or see this region's nucleotide sequence