Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00110

Experiment: m.b. Spectinomycin 0.08 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00105 and CA264_00110 overlap by 1 nucleotidesCA264_00110 and CA264_00115 are separated by 164 nucleotidesCA264_00115 and CA264_00120 are separated by 113 nucleotides CA264_00105: CA264_00105 - nucleotidyltransferase, at 30,270 to 32,201 _00105 CA264_00110: CA264_00110 - DNA polymerase III subunit epsilon, at 32,201 to 32,899 _00110 CA264_00115: CA264_00115 - hypothetical protein, at 33,064 to 33,564 _00115 CA264_00120: CA264_00120 - hypothetical protein, at 33,678 to 34,238 _00120 Position (kb) 32 33Strain fitness (log2 ratio) -2 -1 0 1 2at 31.295 kb on + strand, within CA264_00105at 31.295 kb on + strand, within CA264_00105at 31.295 kb on + strand, within CA264_00105at 31.295 kb on + strand, within CA264_00105at 31.296 kb on - strand, within CA264_00105at 31.298 kb on - strand, within CA264_00105at 31.352 kb on - strand, within CA264_00105at 31.517 kb on - strand, within CA264_00105at 31.575 kb on - strand, within CA264_00105at 31.615 kb on - strand, within CA264_00105at 31.630 kb on + strand, within CA264_00105at 31.668 kb on - strand, within CA264_00105at 31.728 kb on + strand, within CA264_00105at 31.728 kb on + strand, within CA264_00105at 31.729 kb on - strand, within CA264_00105at 31.744 kb on + strand, within CA264_00105at 31.744 kb on + strand, within CA264_00105at 31.745 kb on - strand, within CA264_00105at 31.759 kb on + strand, within CA264_00105at 31.826 kb on + strand, within CA264_00105at 31.826 kb on + strand, within CA264_00105at 31.867 kb on + strand, within CA264_00105at 31.868 kb on - strand, within CA264_00105at 31.868 kb on - strand, within CA264_00105at 31.868 kb on - strand, within CA264_00105at 31.894 kb on + strand, within CA264_00105at 31.953 kb on - strand, within CA264_00105at 32.022 kb on + strandat 32.083 kb on - strandat 32.133 kb on - strandat 32.138 kb on + strandat 32.276 kb on + strand, within CA264_00110at 32.276 kb on + strand, within CA264_00110at 32.277 kb on - strand, within CA264_00110at 32.289 kb on + strand, within CA264_00110at 32.289 kb on + strand, within CA264_00110at 32.289 kb on + strand, within CA264_00110at 32.289 kb on + strand, within CA264_00110at 32.290 kb on - strand, within CA264_00110at 32.290 kb on - strand, within CA264_00110at 32.290 kb on - strand, within CA264_00110at 32.293 kb on + strand, within CA264_00110at 32.293 kb on + strand, within CA264_00110at 32.293 kb on + strand, within CA264_00110at 32.294 kb on - strand, within CA264_00110at 32.312 kb on - strand, within CA264_00110at 32.312 kb on - strand, within CA264_00110at 32.370 kb on + strand, within CA264_00110at 32.370 kb on + strand, within CA264_00110at 32.370 kb on + strand, within CA264_00110at 32.414 kb on - strand, within CA264_00110at 32.414 kb on - strand, within CA264_00110at 32.414 kb on - strand, within CA264_00110at 32.414 kb on - strand, within CA264_00110at 32.437 kb on + strand, within CA264_00110at 32.517 kb on + strand, within CA264_00110at 32.518 kb on - strand, within CA264_00110at 32.673 kb on + strand, within CA264_00110at 32.744 kb on + strand, within CA264_00110at 32.752 kb on - strand, within CA264_00110at 32.771 kb on + strand, within CA264_00110at 32.772 kb on - strand, within CA264_00110at 32.772 kb on - strand, within CA264_00110at 32.774 kb on - strand, within CA264_00110at 32.829 kb on + strand, within CA264_00110at 32.872 kb on + strandat 32.929 kb on + strandat 32.951 kb on + strandat 32.955 kb on + strandat 32.974 kb on - strandat 32.982 kb on + strandat 32.985 kb on - strandat 33.028 kb on + strandat 33.029 kb on - strandat 33.029 kb on - strandat 33.033 kb on - strandat 33.108 kb on + strandat 33.109 kb on - strandat 33.162 kb on - strand, within CA264_00115at 33.210 kb on + strand, within CA264_00115at 33.211 kb on - strand, within CA264_00115at 33.211 kb on - strand, within CA264_00115at 33.212 kb on + strand, within CA264_00115at 33.213 kb on - strand, within CA264_00115at 33.218 kb on + strand, within CA264_00115at 33.219 kb on - strand, within CA264_00115at 33.219 kb on - strand, within CA264_00115at 33.237 kb on + strand, within CA264_00115at 33.326 kb on + strand, within CA264_00115at 33.326 kb on + strand, within CA264_00115at 33.327 kb on - strand, within CA264_00115at 33.329 kb on + strand, within CA264_00115at 33.329 kb on + strand, within CA264_00115at 33.333 kb on - strand, within CA264_00115at 33.373 kb on + strand, within CA264_00115at 33.373 kb on + strand, within CA264_00115at 33.374 kb on - strand, within CA264_00115at 33.374 kb on - strand, within CA264_00115at 33.375 kb on + strand, within CA264_00115at 33.375 kb on + strand, within CA264_00115at 33.375 kb on + strand, within CA264_00115at 33.376 kb on - strand, within CA264_00115at 33.376 kb on - strand, within CA264_00115at 33.425 kb on + strand, within CA264_00115at 33.470 kb on + strand, within CA264_00115at 33.513 kb on - strand, within CA264_00115at 33.513 kb on - strand, within CA264_00115at 33.577 kb on - strandat 33.577 kb on - strandat 33.600 kb on - strandat 33.605 kb on - strandat 33.607 kb on - strandat 33.642 kb on - strandat 33.643 kb on + strandat 33.692 kb on + strandat 33.746 kb on + strand, within CA264_00120at 33.754 kb on - strand, within CA264_00120at 33.780 kb on + strand, within CA264_00120at 33.781 kb on - strand, within CA264_00120at 33.815 kb on + strand, within CA264_00120at 33.815 kb on + strand, within CA264_00120at 33.815 kb on + strand, within CA264_00120at 33.816 kb on - strand, within CA264_00120at 33.816 kb on - strand, within CA264_00120at 33.816 kb on - strand, within CA264_00120at 33.846 kb on - strand, within CA264_00120

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.08 mg/ml
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31,295 + CA264_00105 0.53 +0.1
31,295 + CA264_00105 0.53 -0.6
31,295 + CA264_00105 0.53 -0.7
31,295 + CA264_00105 0.53 -0.3
31,296 - CA264_00105 0.53 -0.1
31,298 - CA264_00105 0.53 -0.7
31,352 - CA264_00105 0.56 -0.9
31,517 - CA264_00105 0.65 +0.0
31,575 - CA264_00105 0.68 -2.0
31,615 - CA264_00105 0.70 +0.5
31,630 + CA264_00105 0.70 -0.2
31,668 - CA264_00105 0.72 +0.3
31,728 + CA264_00105 0.75 -0.0
31,728 + CA264_00105 0.75 +0.3
31,729 - CA264_00105 0.76 -0.6
31,744 + CA264_00105 0.76 -2.3
31,744 + CA264_00105 0.76 +0.0
31,745 - CA264_00105 0.76 -2.0
31,759 + CA264_00105 0.77 -2.0
31,826 + CA264_00105 0.81 +1.1
31,826 + CA264_00105 0.81 -0.8
31,867 + CA264_00105 0.83 +0.0
31,868 - CA264_00105 0.83 -0.2
31,868 - CA264_00105 0.83 +2.0
31,868 - CA264_00105 0.83 -0.6
31,894 + CA264_00105 0.84 -1.1
31,953 - CA264_00105 0.87 -0.8
32,022 + -0.0
32,083 - -0.3
32,133 - -0.0
32,138 + -0.2
32,276 + CA264_00110 0.11 -0.2
32,276 + CA264_00110 0.11 +0.0
32,277 - CA264_00110 0.11 +0.6
32,289 + CA264_00110 0.13 -0.7
32,289 + CA264_00110 0.13 +0.0
32,289 + CA264_00110 0.13 +0.2
32,289 + CA264_00110 0.13 +1.3
32,290 - CA264_00110 0.13 +0.6
32,290 - CA264_00110 0.13 -1.3
32,290 - CA264_00110 0.13 -0.7
32,293 + CA264_00110 0.13 +0.6
32,293 + CA264_00110 0.13 +0.1
32,293 + CA264_00110 0.13 +0.2
32,294 - CA264_00110 0.13 -0.1
32,312 - CA264_00110 0.16 +0.3
32,312 - CA264_00110 0.16 -0.1
32,370 + CA264_00110 0.24 -0.1
32,370 + CA264_00110 0.24 -0.9
32,370 + CA264_00110 0.24 -0.6
32,414 - CA264_00110 0.30 +0.0
32,414 - CA264_00110 0.30 -0.7
32,414 - CA264_00110 0.30 +0.4
32,414 - CA264_00110 0.30 -2.0
32,437 + CA264_00110 0.34 +0.8
32,517 + CA264_00110 0.45 +0.5
32,518 - CA264_00110 0.45 +0.0
32,673 + CA264_00110 0.68 +0.2
32,744 + CA264_00110 0.78 +0.0
32,752 - CA264_00110 0.79 +0.5
32,771 + CA264_00110 0.82 +0.3
32,772 - CA264_00110 0.82 +0.6
32,772 - CA264_00110 0.82 -0.4
32,774 - CA264_00110 0.82 +0.8
32,829 + CA264_00110 0.90 +0.3
32,872 + +0.4
32,929 + +0.3
32,951 + +0.7
32,955 + +0.7
32,974 - +0.4
32,982 + +0.8
32,985 - -1.7
33,028 + -0.2
33,029 - +0.0
33,029 - -0.1
33,033 - +0.2
33,108 + -0.2
33,109 - -0.4
33,162 - CA264_00115 0.20 +0.1
33,210 + CA264_00115 0.29 +0.6
33,211 - CA264_00115 0.29 +0.8
33,211 - CA264_00115 0.29 +0.6
33,212 + CA264_00115 0.30 +1.5
33,213 - CA264_00115 0.30 -0.2
33,218 + CA264_00115 0.31 +0.8
33,219 - CA264_00115 0.31 -0.0
33,219 - CA264_00115 0.31 +1.0
33,237 + CA264_00115 0.35 +1.0
33,326 + CA264_00115 0.52 -1.1
33,326 + CA264_00115 0.52 +0.2
33,327 - CA264_00115 0.52 +1.0
33,329 + CA264_00115 0.53 +0.5
33,329 + CA264_00115 0.53 -0.7
33,333 - CA264_00115 0.54 +0.4
33,373 + CA264_00115 0.62 -0.4
33,373 + CA264_00115 0.62 +0.0
33,374 - CA264_00115 0.62 +0.5
33,374 - CA264_00115 0.62 -1.7
33,375 + CA264_00115 0.62 +0.5
33,375 + CA264_00115 0.62 +1.6
33,375 + CA264_00115 0.62 -0.6
33,376 - CA264_00115 0.62 +0.6
33,376 - CA264_00115 0.62 -1.0
33,425 + CA264_00115 0.72 -0.8
33,470 + CA264_00115 0.81 +1.3
33,513 - CA264_00115 0.90 +0.5
33,513 - CA264_00115 0.90 +1.6
33,577 - +0.8
33,577 - +0.2
33,600 - +1.8
33,605 - +1.0
33,607 - -0.0
33,642 - +1.0
33,643 + +2.3
33,692 + +1.8
33,746 + CA264_00120 0.12 +1.4
33,754 - CA264_00120 0.14 +0.8
33,780 + CA264_00120 0.18 +1.6
33,781 - CA264_00120 0.18 +0.3
33,815 + CA264_00120 0.24 +1.0
33,815 + CA264_00120 0.24 +1.6
33,815 + CA264_00120 0.24 +0.2
33,816 - CA264_00120 0.25 -0.9
33,816 - CA264_00120 0.25 +0.8
33,816 - CA264_00120 0.25 -0.5
33,846 - CA264_00120 0.30 -0.7

Or see this region's nucleotide sequence