Experiment: palatinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3752 and Atu3753 are separated by 233 nucleotides Atu3753 and Atu3754 are separated by 14 nucleotides Atu3754 and Atu3755 are separated by 11 nucleotides Atu3755 and Atu8067 are separated by 146 nucleotides Atu8067 and Atu3757 are separated by 101 nucleotides
Atu3752: Atu3752 - hypothetical protein, at 835,769 to 835,945
Atu3752
Atu3753: Atu3753 - hypothetical protein, at 836,179 to 836,382
Atu3753
Atu3754: Atu3754 - phosphoribosylaminoimidazole carboxylase catalytic subunit, at 836,397 to 836,897
Atu3754
Atu3755: Atu3755 - phosphoribosylaminoimidazole carboxylase ATPase subunit, at 836,909 to 837,985
Atu3755
Atu8067: Atu8067 - 50S ribosomal protein L36, at 838,132 to 838,257
Atu8067
Atu3757: Atu3757 - hypothetical protein, at 838,359 to 838,979
Atu3757
Position (kb) 836
837
838 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 836.009 kb on - strand at 836.015 kb on + strand at 836.063 kb on - strand at 836.079 kb on + strand at 836.089 kb on - strand at 836.097 kb on - strand at 836.147 kb on - strand at 836.462 kb on - strand, within Atu3754 at 836.672 kb on + strand, within Atu3754 at 836.696 kb on - strand, within Atu3754 at 836.882 kb on + strand at 836.887 kb on + strand at 836.913 kb on - strand at 837.043 kb on + strand, within Atu3755 at 837.051 kb on - strand, within Atu3755 at 837.051 kb on - strand, within Atu3755 at 837.300 kb on - strand, within Atu3755 at 837.408 kb on - strand, within Atu3755 at 837.516 kb on + strand, within Atu3755 at 837.524 kb on - strand, within Atu3755 at 837.569 kb on - strand, within Atu3755 at 837.598 kb on + strand, within Atu3755 at 837.617 kb on + strand, within Atu3755 at 837.962 kb on + strand at 837.972 kb on + strand at 837.993 kb on + strand at 838.018 kb on - strand at 838.308 kb on + strand at 838.349 kb on + strand at 838.349 kb on + strand at 838.541 kb on + strand, within Atu3757 at 838.614 kb on - strand, within Atu3757 at 838.895 kb on + strand, within Atu3757 at 838.947 kb on - strand at 838.975 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction palatinose (C) remove 836,009 - -2.0 836,015 + -0.7 836,063 - -0.1 836,079 + -1.5 836,089 - -2.8 836,097 - -0.3 836,147 - -2.1 836,462 - Atu3754 0.13 -6.0 836,672 + Atu3754 0.55 -6.5 836,696 - Atu3754 0.60 -3.6 836,882 + -0.2 836,887 + -1.5 836,913 - -2.6 837,043 + Atu3755 0.12 -3.4 837,051 - Atu3755 0.13 -4.2 837,051 - Atu3755 0.13 -1.2 837,300 - Atu3755 0.36 -2.5 837,408 - Atu3755 0.46 -0.4 837,516 + Atu3755 0.56 -2.9 837,524 - Atu3755 0.57 -3.5 837,569 - Atu3755 0.61 -3.0 837,598 + Atu3755 0.64 -5.4 837,617 + Atu3755 0.66 -4.4 837,962 + +1.6 837,972 + -2.3 837,993 + +0.4 838,018 - -1.1 838,308 + +2.6 838,349 + -0.3 838,349 + +0.6 838,541 + Atu3757 0.29 +1.6 838,614 - Atu3757 0.41 +0.7 838,895 + Atu3757 0.86 -0.1 838,947 - -0.4 838,975 + +0.5
Or see this region's nucleotide sequence