Experiment: syringaldehyde 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yibJ and yibG are separated by 11 nucleotides yibG and yibS are separated by 0 nucleotides yibS and yibW are separated by 1 nucleotides yibW and yibV are separated by 369 nucleotides yibV and yibU are separated by 164 nucleotides
b3595: yibJ - predicted Rhs-family protein (RefSeq), at 3,765,244 to 3,766,188
yibJ
b3596: yibG - hypothetical protein (NCBI), at 3,766,200 to 3,766,661
yibG
b4650: yibS - no description, at 3,766,662 to 3,766,913
yibS
b4651: yibW - no description, at 3,766,915 to 3,766,998
yibW
b4615: yibV - hypothetical protein, no homologs (RefSeq), at 3,767,368 to 3,767,806
yibV
b4652: yibU - no description, at 3,767,971 to 3,768,169
yibU
Position (kb)
3766
3767 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3765.985 kb on - strand, within yibJ at 3765.994 kb on - strand, within yibJ at 3765.994 kb on - strand, within yibJ at 3765.994 kb on - strand, within yibJ at 3765.996 kb on - strand, within yibJ at 3766.001 kb on - strand, within yibJ at 3766.005 kb on - strand, within yibJ at 3766.117 kb on + strand at 3766.691 kb on + strand, within yibS at 3766.713 kb on - strand, within yibS at 3766.715 kb on + strand, within yibS at 3766.715 kb on + strand, within yibS at 3766.754 kb on - strand, within yibS at 3766.757 kb on + strand, within yibS at 3766.773 kb on - strand, within yibS at 3766.780 kb on + strand, within yibS at 3766.780 kb on + strand, within yibS at 3766.840 kb on + strand, within yibS at 3766.840 kb on + strand, within yibS at 3766.840 kb on + strand, within yibS at 3766.840 kb on + strand, within yibS at 3766.841 kb on + strand, within yibS at 3766.856 kb on + strand, within yibS at 3766.858 kb on + strand, within yibS at 3766.858 kb on + strand, within yibS at 3766.858 kb on + strand, within yibS at 3766.859 kb on + strand, within yibS at 3766.878 kb on + strand, within yibS at 3766.878 kb on + strand, within yibS at 3766.892 kb on + strand at 3766.900 kb on + strand at 3766.903 kb on + strand at 3766.903 kb on + strand at 3766.932 kb on + strand, within yibW at 3766.935 kb on + strand, within yibW at 3767.931 kb on - strand at 3767.931 kb on - strand at 3767.938 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 5 mM remove 3,765,985 - yibJ b3595 0.78 -0.1 3,765,994 - yibJ b3595 0.79 -2.0 3,765,994 - yibJ b3595 0.79 -1.8 3,765,994 - yibJ b3595 0.79 -0.1 3,765,996 - yibJ b3595 0.80 +0.1 3,766,001 - yibJ b3595 0.80 -0.1 3,766,005 - yibJ b3595 0.81 +0.4 3,766,117 + -0.8 3,766,691 + yibS b4650 0.12 -1.7 3,766,713 - yibS b4650 0.20 +0.9 3,766,715 + yibS b4650 0.21 -0.1 3,766,715 + yibS b4650 0.21 -0.1 3,766,754 - yibS b4650 0.37 -0.2 3,766,757 + yibS b4650 0.38 +0.1 3,766,773 - yibS b4650 0.44 +0.4 3,766,780 + yibS b4650 0.47 +0.5 3,766,780 + yibS b4650 0.47 +1.1 3,766,840 + yibS b4650 0.71 +0.8 3,766,840 + yibS b4650 0.71 +0.1 3,766,840 + yibS b4650 0.71 +0.1 3,766,840 + yibS b4650 0.71 +1.2 3,766,841 + yibS b4650 0.71 -0.5 3,766,856 + yibS b4650 0.77 -0.4 3,766,858 + yibS b4650 0.78 +0.9 3,766,858 + yibS b4650 0.78 +1.1 3,766,858 + yibS b4650 0.78 +0.8 3,766,859 + yibS b4650 0.78 -0.0 3,766,878 + yibS b4650 0.86 +2.4 3,766,878 + yibS b4650 0.86 +0.9 3,766,892 + +0.1 3,766,900 + +0.6 3,766,903 + +1.1 3,766,903 + +0.0 3,766,932 + yibW b4651 0.20 -0.4 3,766,935 + yibW b4651 0.24 -0.2 3,767,931 - -1.2 3,767,931 - -0.8 3,767,938 - +0.2
Or see this region's nucleotide sequence