Strain Fitness in Escherichia coli BW25113 around b4253

Experiment: syringaldehyde 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	syringaldehyde 5 mM
4,472,489	+	yjgJ	b4251	0.58	+0.4
4,472,499	+	yjgJ	b4251	0.59	-0.5
4,472,502	-	yjgJ	b4251	0.60	+0.3
4,472,568	+	yjgJ	b4251	0.71	+0.1
4,472,568	+	yjgJ	b4251	0.71	+1.1
4,472,576	-	yjgJ	b4251	0.72	-0.8
4,472,612	-	yjgJ	b4251	0.78	+0.6
4,472,645	-	yjgJ	b4251	0.84	+1.1
4,472,645	-	yjgJ	b4251	0.84	+1.9
4,472,664	-	yjgJ	b4251	0.87	+0.1
4,472,673	+	yjgJ	b4251	0.89	-2.0
4,472,675	+	yjgJ	b4251	0.89	+0.1
4,472,679	-	yjgJ	b4251	0.90	+0.1
4,472,679	-	yjgJ	b4251	0.90	-0.0
4,472,681	-				+0.8
4,472,681	-				-0.0
4,472,681	-				-0.9
4,472,681	-				+0.8
4,472,681	-				+0.6
4,472,683	+				+0.4
4,472,692	-				+0.1
4,472,702	+				+2.1
4,472,702	+				+1.1
4,472,704	+				+1.1
4,472,727	+				+0.7
4,472,727	+				-0.2
4,472,729	+				-0.7
4,472,737	+				-0.3
4,472,737	+				-0.0
4,472,739	+				-1.4
4,472,783	+				+1.6
4,472,783	+				+0.6
4,472,838	+				+1.3
4,472,838	+				+0.7
4,472,862	+				+0.3
4,472,924	+				+0.2
4,472,945	+	yjgK	b4252	0.13	-0.4
4,472,958	+	yjgK	b4252	0.16	+0.6
4,472,958	+	yjgK	b4252	0.16	+1.7
4,472,958	+	yjgK	b4252	0.16	+0.4
4,472,960	+	yjgK	b4252	0.17	+1.1
4,472,960	+	yjgK	b4252	0.17	+0.3
4,472,960	+	yjgK	b4252	0.17	+0.1
4,472,999	+	yjgK	b4252	0.25	+0.5
4,473,001	-	yjgK	b4252	0.26	+0.3
4,473,016	+	yjgK	b4252	0.29	+0.5
4,473,016	+	yjgK	b4252	0.29	-0.6
4,473,034	+	yjgK	b4252	0.33	-0.5
4,473,034	+	yjgK	b4252	0.33	+1.1
4,473,042	-	yjgK	b4252	0.35	+0.4
4,473,042	-	yjgK	b4252	0.35	+1.7
4,473,049	+	yjgK	b4252	0.36	+0.9
4,473,049	+	yjgK	b4252	0.36	+0.6
4,473,057	-	yjgK	b4252	0.38	-0.1
4,473,057	-	yjgK	b4252	0.38	-1.4
4,473,057	-	yjgK	b4252	0.38	+0.3
4,473,057	-	yjgK	b4252	0.38	+1.1
4,473,061	+	yjgK	b4252	0.39	+0.1
4,473,061	+	yjgK	b4252	0.39	+1.1
4,473,070	+	yjgK	b4252	0.41	-0.0
4,473,077	-	yjgK	b4252	0.42	-0.1
4,473,077	-	yjgK	b4252	0.42	+1.1
4,473,078	-	yjgK	b4252	0.43	-0.3
4,473,127	-	yjgK	b4252	0.53	-0.7
4,473,136	+	yjgK	b4252	0.55	+0.4
4,473,136	+	yjgK	b4252	0.55	-0.2
4,473,139	+	yjgK	b4252	0.56	-0.2
4,473,139	+	yjgK	b4252	0.56	+1.1
4,473,147	+	yjgK	b4252	0.58	+0.4
4,473,147	+	yjgK	b4252	0.58	-0.3
4,473,147	-	yjgK	b4252	0.58	+0.1
4,473,163	+	yjgK	b4252	0.61	-0.2
4,473,263	+	yjgK	b4252	0.83	-1.7
4,473,263	+	yjgK	b4252	0.83	-1.9
4,473,265	-	yjgK	b4252	0.84	-0.2
4,473,265	-	yjgK	b4252	0.84	-1.0
4,473,273	-	yjgK	b4252	0.86	-1.2
4,473,282	+	yjgK	b4252	0.88	-0.6
4,473,284	+	yjgK	b4252	0.88	+0.5
4,473,284	+	yjgK	b4252	0.88	-0.6
4,473,286	+	yjgK	b4252	0.89	+0.0
4,473,286	+	yjgK	b4252	0.89	-0.5
4,473,291	+	yjgK	b4252	0.90	-0.0
4,473,291	+	yjgK	b4252	0.90	-0.3
4,473,296	+				+0.8
4,473,299	-				-0.6
4,473,304	+				-0.3
4,473,304	+				+1.3
4,473,311	+				+0.3
4,473,314	+				+0.5
4,473,314	+				-0.2
4,473,314	+				+0.8
4,473,426	+				+1.9
4,473,426	+				-0.4
4,473,437	+				-1.4
4,473,445	+				+0.6
4,473,583	+				+0.4
4,473,588	+				-0.0
4,473,613	-				-1.9
4,473,649	+	yjgL	b4253	0.10	-1.3
4,473,695	+	yjgL	b4253	0.13	-0.5
4,473,695	+	yjgL	b4253	0.13	+0.7
4,473,695	+	yjgL	b4253	0.13	-2.0
4,473,710	+	yjgL	b4253	0.14	-1.0
4,473,717	+	yjgL	b4253	0.14	+0.4
4,473,733	+	yjgL	b4253	0.15	+0.1
4,473,885	+	yjgL	b4253	0.23	-0.5
4,473,921	+	yjgL	b4253	0.25	-1.2
4,473,943	+	yjgL	b4253	0.27	-1.0
4,473,954	+	yjgL	b4253	0.27	-0.5
4,473,967	+	yjgL	b4253	0.28	+0.7
4,473,967	+	yjgL	b4253	0.28	-0.5
4,473,978	+	yjgL	b4253	0.29	-0.3
4,474,400	-	yjgL	b4253	0.52	-0.8
4,474,456	+	yjgL	b4253	0.55	+0.5
4,475,127	+				-0.3
4,475,137	+				-0.6
4,475,165	+				+0.4
4,475,175	+				-0.5
4,475,234	-				+0.1
4,475,235	+				+0.7
4,475,250	+				+0.5
4,475,267	-				+0.7
4,475,277	-				-0.9
4,475,357	-				-0.3
4,475,357	-				+0.9
4,475,361	-				-0.1
4,475,361	-				-0.1
4,475,365	-				-0.0
4,475,367	-				+0.9
4,475,367	-				-0.4
4,475,381	-				+1.7
4,475,381	-				-1.3
4,475,381	-				-0.5
4,475,414	+				-1.5
4,475,422	-				-0.5
4,475,422	-				+0.4
4,475,434	+	argI	b4254	0.10	-0.2
4,475,434	+	argI	b4254	0.10	-0.5
4,475,434	+	argI	b4254	0.10	-0.3
4,475,434	+	argI	b4254	0.10	+0.1
4,475,435	-	argI	b4254	0.10	+1.3
4,475,437	-	argI	b4254	0.11	+0.6
4,475,437	-	argI	b4254	0.11	+0.7
4,475,442	-	argI	b4254	0.11	+1.5
4,475,442	-	argI	b4254	0.11	+1.7
4,475,442	-	argI	b4254	0.11	+0.7
4,475,442	-	argI	b4254	0.11	+0.5
4,475,442	-	argI	b4254	0.11	+0.9
4,475,445	-	argI	b4254	0.11	-2.2
4,475,445	-	argI	b4254	0.11	-0.3
4,475,455	-	argI	b4254	0.12	+0.1
4,475,455	-	argI	b4254	0.12	+0.8
4,475,490	-	argI	b4254	0.16	+0.5
4,475,545	-	argI	b4254	0.21	+0.3
4,475,567	-	argI	b4254	0.24	-0.2
4,475,632	+	argI	b4254	0.30	-0.1
4,475,670	-	argI	b4254	0.34	+1.1
4,475,716	+	argI	b4254	0.38	+1.0
4,475,840	-	argI	b4254	0.51	+0.1
4,475,850	+	argI	b4254	0.52	+0.6
4,475,850	+	argI	b4254	0.52	-0.7
4,475,911	+	argI	b4254	0.58	+0.3
4,475,911	+	argI	b4254	0.58	-0.5
4,475,963	-	argI	b4254	0.63	-0.0
4,476,025	-	argI	b4254	0.69	+0.9
4,476,061	+	argI	b4254	0.73	-0.5
4,476,061	+	argI	b4254	0.73	+0.3
4,476,069	-	argI	b4254	0.74	-0.9
4,476,069	-	argI	b4254	0.74	+0.9
4,476,104	+	argI	b4254	0.77	+0.1
4,476,104	+	argI	b4254	0.77	+1.1
4,476,142	+	argI	b4254	0.81	+0.5
4,476,165	-	argI	b4254	0.83	-0.3
4,476,272	+				+0.1
4,476,272	+				-0.3