Strain Fitness in Escherichia coli BW25113 around b2906
Experiment: syringaldehyde 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | syringaldehyde 5 mM |
---|---|---|---|---|---|
remove | |||||
3,048,181 | - | gcvT | b2905 | 0.54 | +0.1 |
3,048,181 | - | gcvT | b2905 | 0.54 | -0.6 |
3,048,196 | - | gcvT | b2905 | 0.55 | +0.7 |
3,048,196 | - | gcvT | b2905 | 0.55 | -0.3 |
3,048,231 | - | gcvT | b2905 | 0.58 | +0.3 |
3,048,231 | - | gcvT | b2905 | 0.58 | +0.9 |
3,048,264 | - | gcvT | b2905 | 0.61 | -0.6 |
3,048,306 | + | gcvT | b2905 | 0.65 | +0.6 |
3,048,324 | - | gcvT | b2905 | 0.67 | +2.1 |
3,048,339 | + | gcvT | b2905 | 0.68 | +0.5 |
3,048,339 | + | gcvT | b2905 | 0.68 | +1.5 |
3,048,399 | + | gcvT | b2905 | 0.73 | +1.8 |
3,048,569 | + | gcvT | b2905 | 0.89 | -0.1 |
3,048,569 | + | gcvT | b2905 | 0.89 | +1.4 |
3,048,608 | - | +0.2 | |||
3,048,624 | - | -0.1 | |||
3,048,683 | + | -0.8 | |||
3,048,683 | + | +1.4 | |||
3,048,756 | + | +0.4 | |||
3,048,756 | + | +0.9 | |||
3,048,859 | - | -0.2 | |||
3,048,859 | - | -0.6 | |||
3,048,928 | - | -0.1 | |||
3,049,195 | - | -1.6 | |||
3,049,205 | - | +0.5 | |||
3,049,205 | - | -1.9 | |||
3,049,208 | - | -0.3 | |||
3,049,208 | - | +0.9 | |||
3,049,213 | - | -1.1 | |||
3,049,310 | - | visC | b2906 | 0.14 | -0.4 |
3,049,310 | - | visC | b2906 | 0.14 | +0.9 |
3,049,315 | - | visC | b2906 | 0.15 | -2.1 |
3,049,365 | + | visC | b2906 | 0.19 | -0.1 |
3,049,406 | + | visC | b2906 | 0.22 | -2.1 |
3,049,458 | + | visC | b2906 | 0.27 | -1.1 |
3,049,474 | - | visC | b2906 | 0.28 | -1.1 |
3,049,536 | + | visC | b2906 | 0.33 | -1.9 |
3,049,544 | - | visC | b2906 | 0.34 | +0.9 |
3,049,544 | - | visC | b2906 | 0.34 | -1.4 |
3,049,546 | - | visC | b2906 | 0.34 | +0.4 |
3,049,546 | - | visC | b2906 | 0.34 | -0.6 |
3,049,546 | - | visC | b2906 | 0.34 | -0.1 |
3,049,549 | + | visC | b2906 | 0.34 | -1.4 |
3,049,563 | - | visC | b2906 | 0.35 | -0.6 |
3,049,632 | + | visC | b2906 | 0.41 | +0.4 |
3,049,947 | + | visC | b2906 | 0.67 | +0.9 |
3,049,947 | + | visC | b2906 | 0.67 | -0.1 |
3,049,999 | - | visC | b2906 | 0.72 | -1.2 |
3,049,999 | - | visC | b2906 | 0.72 | +0.9 |
3,050,041 | + | visC | b2906 | 0.75 | -0.1 |
3,050,041 | + | visC | b2906 | 0.75 | -1.1 |
3,050,041 | - | visC | b2906 | 0.75 | -0.5 |
3,050,093 | + | visC | b2906 | 0.79 | -1.2 |
3,050,093 | + | visC | b2906 | 0.79 | -0.1 |
3,050,093 | + | visC | b2906 | 0.79 | -0.1 |
3,050,093 | - | visC | b2906 | 0.79 | -1.1 |
3,050,184 | + | visC | b2906 | 0.87 | -1.6 |
3,050,241 | + | -0.1 | |||
3,050,241 | + | +0.9 | |||
3,050,370 | + | -0.8 | |||
3,050,370 | + | +0.4 | |||
3,050,376 | + | -1.4 | |||
3,050,376 | + | -2.2 | |||
3,050,399 | - | +0.5 |
Or see this region's nucleotide sequence