Strain Fitness in Escherichia coli BW25113 around b1434
Experiment: syringaldehyde 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | syringaldehyde 5 mM |
---|---|---|---|---|---|
remove | |||||
1,503,340 | - | b1433 | b1433 | 0.35 | +0.4 |
1,503,447 | + | b1433 | b1433 | 0.44 | +0.9 |
1,503,447 | + | b1433 | b1433 | 0.44 | -0.1 |
1,503,479 | - | b1433 | b1433 | 0.47 | -0.7 |
1,503,479 | - | b1433 | b1433 | 0.47 | +0.4 |
1,503,536 | + | b1433 | b1433 | 0.52 | -0.8 |
1,503,536 | + | b1433 | b1433 | 0.52 | -1.7 |
1,503,832 | + | b1433 | b1433 | 0.77 | -0.7 |
1,503,890 | - | b1433 | b1433 | 0.82 | -1.4 |
1,503,890 | - | b1433 | b1433 | 0.82 | -0.7 |
1,504,026 | + | +0.6 | |||
1,504,588 | + | ydcN | b1434 | 0.73 | +0.9 |
1,504,607 | - | ydcN | b1434 | 0.77 | -1.2 |
1,504,721 | - | -1.6 | |||
1,504,837 | - | -1.7 | |||
1,504,884 | + | +0.3 | |||
1,505,058 | + | ydcP | b1435 | 0.13 | -0.6 |
1,505,064 | - | ydcP | b1435 | 0.13 | +0.2 |
1,505,068 | + | ydcP | b1435 | 0.13 | +0.2 |
1,505,079 | + | ydcP | b1435 | 0.14 | -0.4 |
1,505,146 | + | ydcP | b1435 | 0.17 | -0.7 |
1,505,560 | + | ydcP | b1435 | 0.38 | -1.5 |
Or see this region's nucleotide sequence