Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3803

Experiment: D-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3801 and PfGW456L13_3802 are separated by 90 nucleotidesPfGW456L13_3802 and PfGW456L13_3803 are separated by 5 nucleotidesPfGW456L13_3803 and PfGW456L13_3804 are separated by 183 nucleotides PfGW456L13_3801 - hypothetical protein, at 4,273,065 to 4,273,217 _3801 PfGW456L13_3802 - Nicotinamidase (EC 3.5.1.19), at 4,273,308 to 4,273,985 _3802 PfGW456L13_3803 - Cytosine/purine/uracil/thiamine/allantoin permease family protein, at 4,273,991 to 4,275,355 _3803 PfGW456L13_3804 - glutamine synthetase family protein, at 4,275,539 to 4,276,885 _3804 Position (kb) 4273 4274 4275 4276Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4273.049 kb on - strandat 4273.207 kb on + strandat 4273.207 kb on + strandat 4273.207 kb on + strandat 4273.207 kb on + strandat 4273.208 kb on - strandat 4273.208 kb on - strandat 4273.208 kb on - strandat 4273.208 kb on - strandat 4273.270 kb on + strandat 4273.316 kb on + strandat 4273.317 kb on - strandat 4273.443 kb on + strand, within PfGW456L13_3802at 4273.443 kb on + strand, within PfGW456L13_3802at 4273.443 kb on + strand, within PfGW456L13_3802at 4273.443 kb on + strand, within PfGW456L13_3802at 4273.443 kb on + strand, within PfGW456L13_3802at 4273.443 kb on + strand, within PfGW456L13_3802at 4273.443 kb on + strand, within PfGW456L13_3802at 4273.443 kb on + strand, within PfGW456L13_3802at 4273.443 kb on + strand, within PfGW456L13_3802at 4273.443 kb on + strand, within PfGW456L13_3802at 4273.443 kb on + strand, within PfGW456L13_3802at 4273.443 kb on + strand, within PfGW456L13_3802at 4273.444 kb on - strand, within PfGW456L13_3802at 4273.444 kb on - strand, within PfGW456L13_3802at 4273.444 kb on - strand, within PfGW456L13_3802at 4273.444 kb on - strand, within PfGW456L13_3802at 4273.444 kb on - strand, within PfGW456L13_3802at 4273.444 kb on - strand, within PfGW456L13_3802at 4273.444 kb on - strand, within PfGW456L13_3802at 4273.445 kb on + strand, within PfGW456L13_3802at 4273.445 kb on + strand, within PfGW456L13_3802at 4273.446 kb on - strand, within PfGW456L13_3802at 4273.525 kb on - strand, within PfGW456L13_3802at 4273.605 kb on + strand, within PfGW456L13_3802at 4273.788 kb on + strand, within PfGW456L13_3802at 4273.821 kb on + strand, within PfGW456L13_3802at 4273.822 kb on - strand, within PfGW456L13_3802at 4274.063 kb on + strandat 4274.063 kb on + strandat 4274.063 kb on + strandat 4274.063 kb on + strandat 4274.063 kb on + strandat 4274.063 kb on + strandat 4274.063 kb on + strandat 4274.063 kb on + strandat 4274.063 kb on + strandat 4274.063 kb on + strandat 4274.064 kb on - strandat 4274.064 kb on - strandat 4274.306 kb on + strand, within PfGW456L13_3803at 4274.306 kb on + strand, within PfGW456L13_3803at 4274.307 kb on - strand, within PfGW456L13_3803at 4274.307 kb on - strand, within PfGW456L13_3803at 4274.307 kb on - strand, within PfGW456L13_3803at 4274.386 kb on + strand, within PfGW456L13_3803at 4274.387 kb on - strand, within PfGW456L13_3803at 4274.387 kb on - strand, within PfGW456L13_3803at 4274.390 kb on + strand, within PfGW456L13_3803at 4274.390 kb on + strand, within PfGW456L13_3803at 4274.390 kb on + strand, within PfGW456L13_3803at 4274.391 kb on - strand, within PfGW456L13_3803at 4274.391 kb on - strand, within PfGW456L13_3803at 4274.391 kb on - strand, within PfGW456L13_3803at 4274.391 kb on - strand, within PfGW456L13_3803at 4274.426 kb on + strand, within PfGW456L13_3803at 4274.427 kb on - strand, within PfGW456L13_3803at 4274.427 kb on - strand, within PfGW456L13_3803at 4274.609 kb on + strand, within PfGW456L13_3803at 4274.609 kb on + strand, within PfGW456L13_3803at 4274.609 kb on + strand, within PfGW456L13_3803at 4274.609 kb on + strand, within PfGW456L13_3803at 4274.609 kb on + strand, within PfGW456L13_3803at 4274.609 kb on + strand, within PfGW456L13_3803at 4274.618 kb on + strand, within PfGW456L13_3803at 4274.618 kb on + strand, within PfGW456L13_3803at 4274.618 kb on + strand, within PfGW456L13_3803at 4274.618 kb on + strand, within PfGW456L13_3803at 4274.619 kb on - strand, within PfGW456L13_3803at 4274.619 kb on - strand, within PfGW456L13_3803at 4274.619 kb on - strand, within PfGW456L13_3803at 4274.619 kb on - strand, within PfGW456L13_3803at 4274.619 kb on - strand, within PfGW456L13_3803at 4274.619 kb on - strand, within PfGW456L13_3803at 4274.619 kb on - strand, within PfGW456L13_3803at 4274.619 kb on - strand, within PfGW456L13_3803at 4274.619 kb on - strand, within PfGW456L13_3803at 4274.619 kb on - strand, within PfGW456L13_3803at 4274.630 kb on + strand, within PfGW456L13_3803at 4274.630 kb on + strand, within PfGW456L13_3803at 4274.679 kb on - strand, within PfGW456L13_3803at 4274.679 kb on - strand, within PfGW456L13_3803at 4274.684 kb on + strand, within PfGW456L13_3803at 4274.685 kb on - strand, within PfGW456L13_3803at 4274.831 kb on + strand, within PfGW456L13_3803at 4275.038 kb on + strand, within PfGW456L13_3803at 4275.038 kb on + strand, within PfGW456L13_3803at 4275.039 kb on - strand, within PfGW456L13_3803at 4275.039 kb on - strand, within PfGW456L13_3803at 4275.039 kb on - strand, within PfGW456L13_3803at 4275.039 kb on - strand, within PfGW456L13_3803at 4275.077 kb on + strand, within PfGW456L13_3803at 4275.077 kb on + strandat 4275.078 kb on - strand, within PfGW456L13_3803at 4275.078 kb on - strand, within PfGW456L13_3803at 4275.078 kb on - strand, within PfGW456L13_3803at 4275.078 kb on - strand, within PfGW456L13_3803at 4275.078 kb on - strand, within PfGW456L13_3803at 4275.080 kb on + strand, within PfGW456L13_3803at 4275.080 kb on + strand, within PfGW456L13_3803at 4275.080 kb on + strand, within PfGW456L13_3803at 4275.081 kb on - strand, within PfGW456L13_3803at 4275.081 kb on - strand, within PfGW456L13_3803at 4275.137 kb on + strand, within PfGW456L13_3803at 4275.137 kb on + strand, within PfGW456L13_3803at 4275.218 kb on + strand, within PfGW456L13_3803at 4275.218 kb on + strand, within PfGW456L13_3803at 4275.219 kb on - strandat 4275.219 kb on - strandat 4275.297 kb on - strandat 4275.297 kb on - strandat 4275.299 kb on + strandat 4275.300 kb on - strandat 4275.300 kb on - strandat 4275.403 kb on - strandat 4275.413 kb on - strandat 4275.616 kb on - strandat 4275.616 kb on - strandat 4275.804 kb on + strand, within PfGW456L13_3804at 4275.804 kb on + strand, within PfGW456L13_3804at 4275.872 kb on - strand, within PfGW456L13_3804at 4276.071 kb on + strand, within PfGW456L13_3804at 4276.071 kb on + strand, within PfGW456L13_3804at 4276.072 kb on - strand, within PfGW456L13_3804at 4276.072 kb on - strand, within PfGW456L13_3804at 4276.072 kb on - strand, within PfGW456L13_3804at 4276.116 kb on + strand, within PfGW456L13_3804at 4276.116 kb on + strand, within PfGW456L13_3804at 4276.117 kb on - strand, within PfGW456L13_3804at 4276.117 kb on - strand, within PfGW456L13_3804

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (C)
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4,273,049 - -0.8
4,273,207 + +0.7
4,273,207 + +0.5
4,273,207 + -0.0
4,273,207 + -1.1
4,273,208 - -1.8
4,273,208 - -0.7
4,273,208 - +0.0
4,273,208 - +1.6
4,273,270 + -0.4
4,273,316 + +1.3
4,273,317 - -0.4
4,273,443 + PfGW456L13_3802 0.20 +0.1
4,273,443 + PfGW456L13_3802 0.20 +0.6
4,273,443 + PfGW456L13_3802 0.20 +0.1
4,273,443 + PfGW456L13_3802 0.20 -1.7
4,273,443 + PfGW456L13_3802 0.20 -1.2
4,273,443 + PfGW456L13_3802 0.20 -0.8
4,273,443 + PfGW456L13_3802 0.20 +1.3
4,273,443 + PfGW456L13_3802 0.20 -2.2
4,273,443 + PfGW456L13_3802 0.20 +0.5
4,273,443 + PfGW456L13_3802 0.20 -0.7
4,273,443 + PfGW456L13_3802 0.20 +0.5
4,273,443 + PfGW456L13_3802 0.20 +0.1
4,273,444 - PfGW456L13_3802 0.20 -1.0
4,273,444 - PfGW456L13_3802 0.20 +2.2
4,273,444 - PfGW456L13_3802 0.20 -1.9
4,273,444 - PfGW456L13_3802 0.20 +0.1
4,273,444 - PfGW456L13_3802 0.20 -0.3
4,273,444 - PfGW456L13_3802 0.20 +1.6
4,273,444 - PfGW456L13_3802 0.20 +0.5
4,273,445 + PfGW456L13_3802 0.20 +0.7
4,273,445 + PfGW456L13_3802 0.20 -0.6
4,273,446 - PfGW456L13_3802 0.20 -0.1
4,273,525 - PfGW456L13_3802 0.32 +0.9
4,273,605 + PfGW456L13_3802 0.44 -0.0
4,273,788 + PfGW456L13_3802 0.71 -0.7
4,273,821 + PfGW456L13_3802 0.76 -0.7
4,273,822 - PfGW456L13_3802 0.76 -0.4
4,274,063 + +3.2
4,274,063 + -0.2
4,274,063 + -0.7
4,274,063 + +3.0
4,274,063 + +0.4
4,274,063 + +0.3
4,274,063 + +0.4
4,274,063 + -0.0
4,274,063 + -0.2
4,274,063 + -1.3
4,274,064 - +0.0
4,274,064 - +0.2
4,274,306 + PfGW456L13_3803 0.23 -0.1
4,274,306 + PfGW456L13_3803 0.23 -0.1
4,274,307 - PfGW456L13_3803 0.23 +0.6
4,274,307 - PfGW456L13_3803 0.23 -0.4
4,274,307 - PfGW456L13_3803 0.23 -1.1
4,274,386 + PfGW456L13_3803 0.29 +0.6
4,274,387 - PfGW456L13_3803 0.29 +0.4
4,274,387 - PfGW456L13_3803 0.29 -0.3
4,274,390 + PfGW456L13_3803 0.29 -0.6
4,274,390 + PfGW456L13_3803 0.29 -0.7
4,274,390 + PfGW456L13_3803 0.29 -0.3
4,274,391 - PfGW456L13_3803 0.29 -0.1
4,274,391 - PfGW456L13_3803 0.29 -0.9
4,274,391 - PfGW456L13_3803 0.29 -0.8
4,274,391 - PfGW456L13_3803 0.29 +0.5
4,274,426 + PfGW456L13_3803 0.32 -0.4
4,274,427 - PfGW456L13_3803 0.32 +0.2
4,274,427 - PfGW456L13_3803 0.32 +0.2
4,274,609 + PfGW456L13_3803 0.45 +0.8
4,274,609 + PfGW456L13_3803 0.45 -0.2
4,274,609 + PfGW456L13_3803 0.45 -0.7
4,274,609 + PfGW456L13_3803 0.45 -0.7
4,274,609 + PfGW456L13_3803 0.45 +0.9
4,274,609 + PfGW456L13_3803 0.45 -0.8
4,274,618 + PfGW456L13_3803 0.46 -0.1
4,274,618 + PfGW456L13_3803 0.46 +1.9
4,274,618 + PfGW456L13_3803 0.46 +0.9
4,274,618 + PfGW456L13_3803 0.46 +0.2
4,274,619 - PfGW456L13_3803 0.46 +0.9
4,274,619 - PfGW456L13_3803 0.46 -0.8
4,274,619 - PfGW456L13_3803 0.46 -0.1
4,274,619 - PfGW456L13_3803 0.46 -1.2
4,274,619 - PfGW456L13_3803 0.46 +0.1
4,274,619 - PfGW456L13_3803 0.46 -0.7
4,274,619 - PfGW456L13_3803 0.46 -0.3
4,274,619 - PfGW456L13_3803 0.46 -0.1
4,274,619 - PfGW456L13_3803 0.46 -1.0
4,274,619 - PfGW456L13_3803 0.46 +1.7
4,274,630 + PfGW456L13_3803 0.47 -0.6
4,274,630 + PfGW456L13_3803 0.47 +0.0
4,274,679 - PfGW456L13_3803 0.50 -1.3
4,274,679 - PfGW456L13_3803 0.50 +1.0
4,274,684 + PfGW456L13_3803 0.51 -0.0
4,274,685 - PfGW456L13_3803 0.51 +1.6
4,274,831 + PfGW456L13_3803 0.62 +0.4
4,275,038 + PfGW456L13_3803 0.77 +0.1
4,275,038 + PfGW456L13_3803 0.77 +0.4
4,275,039 - PfGW456L13_3803 0.77 -0.1
4,275,039 - PfGW456L13_3803 0.77 -0.5
4,275,039 - PfGW456L13_3803 0.77 +1.5
4,275,039 - PfGW456L13_3803 0.77 -0.1
4,275,077 + PfGW456L13_3803 0.80 +1.6
4,275,077 + +1.3
4,275,078 - PfGW456L13_3803 0.80 +0.9
4,275,078 - PfGW456L13_3803 0.80 -0.7
4,275,078 - PfGW456L13_3803 0.80 -0.1
4,275,078 - PfGW456L13_3803 0.80 +2.5
4,275,078 - PfGW456L13_3803 0.80 +0.7
4,275,080 + PfGW456L13_3803 0.80 -2.4
4,275,080 + PfGW456L13_3803 0.80 +0.2
4,275,080 + PfGW456L13_3803 0.80 +0.5
4,275,081 - PfGW456L13_3803 0.80 +1.1
4,275,081 - PfGW456L13_3803 0.80 -1.1
4,275,137 + PfGW456L13_3803 0.84 +0.2
4,275,137 + PfGW456L13_3803 0.84 -0.7
4,275,218 + PfGW456L13_3803 0.90 +0.1
4,275,218 + PfGW456L13_3803 0.90 -0.4
4,275,219 - +0.7
4,275,219 - -2.0
4,275,297 - +1.4
4,275,297 - +0.9
4,275,299 + +0.4
4,275,300 - -1.1
4,275,300 - +0.2
4,275,403 - -0.5
4,275,413 - +1.8
4,275,616 - +0.2
4,275,616 - -1.9
4,275,804 + PfGW456L13_3804 0.20 -0.7
4,275,804 + PfGW456L13_3804 0.20 +0.3
4,275,872 - PfGW456L13_3804 0.25 +0.3
4,276,071 + PfGW456L13_3804 0.39 -0.3
4,276,071 + PfGW456L13_3804 0.39 -0.4
4,276,072 - PfGW456L13_3804 0.40 +0.0
4,276,072 - PfGW456L13_3804 0.40 -1.1
4,276,072 - PfGW456L13_3804 0.40 -0.9
4,276,116 + PfGW456L13_3804 0.43 +0.7
4,276,116 + PfGW456L13_3804 0.43 -1.1
4,276,117 - PfGW456L13_3804 0.43 +1.5
4,276,117 - PfGW456L13_3804 0.43 +0.1

Or see this region's nucleotide sequence