Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3736

Experiment: D-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3735 and PfGW456L13_3736 are separated by 346 nucleotidesPfGW456L13_3736 and PfGW456L13_3737 are separated by 106 nucleotides PfGW456L13_3735 - Tricarboxylate transport protein TctC, at 4,201,217 to 4,202,182 _3735 PfGW456L13_3736 - potassium efflux system KefA, at 4,202,529 to 4,204,925 _3736 PfGW456L13_3737 - Aldehyde dehydrogenase (EC 1.2.1.3), at 4,205,032 to 4,206,522 _3737 Position (kb) 4202 4203 4204 4205Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4201.542 kb on + strand, within PfGW456L13_3735at 4201.542 kb on + strand, within PfGW456L13_3735at 4201.542 kb on + strand, within PfGW456L13_3735at 4201.542 kb on + strand, within PfGW456L13_3735at 4201.542 kb on + strand, within PfGW456L13_3735at 4201.542 kb on + strand, within PfGW456L13_3735at 4201.542 kb on + strand, within PfGW456L13_3735at 4201.543 kb on - strand, within PfGW456L13_3735at 4201.543 kb on - strand, within PfGW456L13_3735at 4201.543 kb on - strand, within PfGW456L13_3735at 4201.543 kb on - strand, within PfGW456L13_3735at 4201.543 kb on - strand, within PfGW456L13_3735at 4201.543 kb on - strand, within PfGW456L13_3735at 4201.543 kb on - strand, within PfGW456L13_3735at 4201.543 kb on - strand, within PfGW456L13_3735at 4201.635 kb on + strand, within PfGW456L13_3735at 4201.635 kb on + strand, within PfGW456L13_3735at 4201.635 kb on + strand, within PfGW456L13_3735at 4201.635 kb on + strand, within PfGW456L13_3735at 4201.636 kb on - strand, within PfGW456L13_3735at 4201.636 kb on - strand, within PfGW456L13_3735at 4201.636 kb on - strand, within PfGW456L13_3735at 4201.779 kb on + strand, within PfGW456L13_3735at 4201.779 kb on + strand, within PfGW456L13_3735at 4201.780 kb on - strand, within PfGW456L13_3735at 4201.780 kb on - strand, within PfGW456L13_3735at 4201.780 kb on - strand, within PfGW456L13_3735at 4201.812 kb on + strand, within PfGW456L13_3735at 4201.812 kb on + strand, within PfGW456L13_3735at 4201.813 kb on - strand, within PfGW456L13_3735at 4202.009 kb on - strand, within PfGW456L13_3735at 4202.055 kb on + strand, within PfGW456L13_3735at 4202.263 kb on + strandat 4202.263 kb on + strandat 4202.263 kb on + strandat 4202.263 kb on + strandat 4202.264 kb on - strandat 4202.264 kb on - strandat 4202.264 kb on - strandat 4202.264 kb on - strandat 4202.331 kb on + strandat 4202.331 kb on + strandat 4202.331 kb on + strandat 4202.331 kb on + strandat 4202.331 kb on + strandat 4202.331 kb on + strandat 4202.332 kb on - strandat 4202.332 kb on - strandat 4202.332 kb on - strandat 4202.332 kb on - strandat 4202.472 kb on + strandat 4202.473 kb on - strandat 4202.487 kb on - strandat 4202.487 kb on - strandat 4202.499 kb on + strandat 4202.499 kb on + strandat 4202.556 kb on + strandat 4202.556 kb on + strandat 4202.557 kb on - strandat 4202.742 kb on + strandat 4202.779 kb on + strand, within PfGW456L13_3736at 4202.779 kb on + strand, within PfGW456L13_3736at 4202.779 kb on + strand, within PfGW456L13_3736at 4202.903 kb on + strand, within PfGW456L13_3736at 4202.904 kb on - strand, within PfGW456L13_3736at 4202.904 kb on - strand, within PfGW456L13_3736at 4203.223 kb on + strand, within PfGW456L13_3736at 4203.224 kb on - strand, within PfGW456L13_3736at 4203.224 kb on - strand, within PfGW456L13_3736at 4203.399 kb on + strand, within PfGW456L13_3736at 4203.447 kb on + strand, within PfGW456L13_3736at 4203.447 kb on + strand, within PfGW456L13_3736at 4203.448 kb on - strand, within PfGW456L13_3736at 4203.448 kb on - strand, within PfGW456L13_3736at 4203.448 kb on - strand, within PfGW456L13_3736at 4203.449 kb on + strand, within PfGW456L13_3736at 4203.449 kb on + strand, within PfGW456L13_3736at 4203.449 kb on + strand, within PfGW456L13_3736at 4203.449 kb on + strand, within PfGW456L13_3736at 4203.450 kb on - strand, within PfGW456L13_3736at 4203.450 kb on - strand, within PfGW456L13_3736at 4203.450 kb on - strand, within PfGW456L13_3736at 4203.450 kb on - strand, within PfGW456L13_3736at 4203.780 kb on + strand, within PfGW456L13_3736at 4203.835 kb on - strand, within PfGW456L13_3736at 4203.861 kb on + strand, within PfGW456L13_3736at 4203.861 kb on + strand, within PfGW456L13_3736at 4203.862 kb on - strand, within PfGW456L13_3736at 4203.900 kb on + strand, within PfGW456L13_3736at 4203.901 kb on - strand, within PfGW456L13_3736at 4203.901 kb on - strand, within PfGW456L13_3736at 4203.937 kb on - strand, within PfGW456L13_3736at 4204.132 kb on + strand, within PfGW456L13_3736at 4204.133 kb on - strand, within PfGW456L13_3736at 4204.323 kb on + strand, within PfGW456L13_3736at 4204.540 kb on + strand, within PfGW456L13_3736at 4204.555 kb on + strand, within PfGW456L13_3736at 4204.555 kb on + strand, within PfGW456L13_3736at 4204.555 kb on + strand, within PfGW456L13_3736at 4204.657 kb on + strand, within PfGW456L13_3736at 4204.657 kb on + strand, within PfGW456L13_3736at 4204.657 kb on + strand, within PfGW456L13_3736at 4204.722 kb on + strandat 4204.722 kb on + strandat 4204.722 kb on + strandat 4204.722 kb on + strandat 4204.722 kb on + strandat 4204.723 kb on - strandat 4204.723 kb on - strandat 4204.766 kb on - strandat 4204.815 kb on + strandat 4204.816 kb on - strandat 4204.973 kb on - strandat 4204.973 kb on - strandat 4204.973 kb on - strandat 4204.973 kb on - strandat 4204.973 kb on - strandat 4204.989 kb on + strandat 4204.990 kb on - strandat 4204.990 kb on - strandat 4205.022 kb on + strandat 4205.023 kb on - strandat 4205.023 kb on - strandat 4205.043 kb on + strandat 4205.066 kb on + strandat 4205.066 kb on + strandat 4205.067 kb on - strandat 4205.067 kb on - strandat 4205.067 kb on - strandat 4205.594 kb on + strand, within PfGW456L13_3737at 4205.595 kb on - strand, within PfGW456L13_3737at 4205.595 kb on - strand, within PfGW456L13_3737

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (C)
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4,201,542 + PfGW456L13_3735 0.34 -0.4
4,201,542 + PfGW456L13_3735 0.34 +1.0
4,201,542 + PfGW456L13_3735 0.34 +0.6
4,201,542 + PfGW456L13_3735 0.34 +0.7
4,201,542 + PfGW456L13_3735 0.34 -0.6
4,201,542 + PfGW456L13_3735 0.34 -0.2
4,201,542 + PfGW456L13_3735 0.34 +0.5
4,201,543 - PfGW456L13_3735 0.34 -0.1
4,201,543 - PfGW456L13_3735 0.34 +1.1
4,201,543 - PfGW456L13_3735 0.34 -0.1
4,201,543 - PfGW456L13_3735 0.34 +1.1
4,201,543 - PfGW456L13_3735 0.34 +0.5
4,201,543 - PfGW456L13_3735 0.34 -0.6
4,201,543 - PfGW456L13_3735 0.34 +1.2
4,201,543 - PfGW456L13_3735 0.34 -0.1
4,201,635 + PfGW456L13_3735 0.43 -1.4
4,201,635 + PfGW456L13_3735 0.43 +0.2
4,201,635 + PfGW456L13_3735 0.43 +0.7
4,201,635 + PfGW456L13_3735 0.43 -3.1
4,201,636 - PfGW456L13_3735 0.43 -0.7
4,201,636 - PfGW456L13_3735 0.43 -0.0
4,201,636 - PfGW456L13_3735 0.43 +0.1
4,201,779 + PfGW456L13_3735 0.58 +0.5
4,201,779 + PfGW456L13_3735 0.58 +1.0
4,201,780 - PfGW456L13_3735 0.58 +0.0
4,201,780 - PfGW456L13_3735 0.58 +1.9
4,201,780 - PfGW456L13_3735 0.58 +0.1
4,201,812 + PfGW456L13_3735 0.62 -0.9
4,201,812 + PfGW456L13_3735 0.62 -0.1
4,201,813 - PfGW456L13_3735 0.62 +1.4
4,202,009 - PfGW456L13_3735 0.82 +1.2
4,202,055 + PfGW456L13_3735 0.87 -0.1
4,202,263 + -0.2
4,202,263 + +0.4
4,202,263 + +0.7
4,202,263 + -0.5
4,202,264 - -0.8
4,202,264 - +0.4
4,202,264 - +0.5
4,202,264 - -0.4
4,202,331 + +0.4
4,202,331 + +0.3
4,202,331 + +0.5
4,202,331 + +0.1
4,202,331 + -0.2
4,202,331 + -0.6
4,202,332 - -1.4
4,202,332 - +0.9
4,202,332 - -0.7
4,202,332 - +0.0
4,202,472 + +0.4
4,202,473 - -0.4
4,202,487 - +0.4
4,202,487 - -0.5
4,202,499 + -1.3
4,202,499 + -1.1
4,202,556 + +1.5
4,202,556 + -0.1
4,202,557 - +0.3
4,202,742 + -0.0
4,202,779 + PfGW456L13_3736 0.10 +0.8
4,202,779 + PfGW456L13_3736 0.10 -1.0
4,202,779 + PfGW456L13_3736 0.10 -0.5
4,202,903 + PfGW456L13_3736 0.16 -0.5
4,202,904 - PfGW456L13_3736 0.16 -0.4
4,202,904 - PfGW456L13_3736 0.16 -0.2
4,203,223 + PfGW456L13_3736 0.29 -0.9
4,203,224 - PfGW456L13_3736 0.29 -0.1
4,203,224 - PfGW456L13_3736 0.29 -0.4
4,203,399 + PfGW456L13_3736 0.36 +0.4
4,203,447 + PfGW456L13_3736 0.38 -0.1
4,203,447 + PfGW456L13_3736 0.38 -1.5
4,203,448 - PfGW456L13_3736 0.38 +0.6
4,203,448 - PfGW456L13_3736 0.38 -0.1
4,203,448 - PfGW456L13_3736 0.38 +0.6
4,203,449 + PfGW456L13_3736 0.38 +0.5
4,203,449 + PfGW456L13_3736 0.38 -0.1
4,203,449 + PfGW456L13_3736 0.38 -0.5
4,203,449 + PfGW456L13_3736 0.38 +0.0
4,203,450 - PfGW456L13_3736 0.38 -0.8
4,203,450 - PfGW456L13_3736 0.38 -0.5
4,203,450 - PfGW456L13_3736 0.38 +0.1
4,203,450 - PfGW456L13_3736 0.38 -2.5
4,203,780 + PfGW456L13_3736 0.52 +0.3
4,203,835 - PfGW456L13_3736 0.54 -0.0
4,203,861 + PfGW456L13_3736 0.56 -0.7
4,203,861 + PfGW456L13_3736 0.56 +1.3
4,203,862 - PfGW456L13_3736 0.56 -0.4
4,203,900 + PfGW456L13_3736 0.57 -0.0
4,203,901 - PfGW456L13_3736 0.57 +0.7
4,203,901 - PfGW456L13_3736 0.57 +0.8
4,203,937 - PfGW456L13_3736 0.59 -0.6
4,204,132 + PfGW456L13_3736 0.67 -0.3
4,204,133 - PfGW456L13_3736 0.67 -0.7
4,204,323 + PfGW456L13_3736 0.75 +0.0
4,204,540 + PfGW456L13_3736 0.84 -0.4
4,204,555 + PfGW456L13_3736 0.85 +1.1
4,204,555 + PfGW456L13_3736 0.85 -0.1
4,204,555 + PfGW456L13_3736 0.85 +1.1
4,204,657 + PfGW456L13_3736 0.89 -0.6
4,204,657 + PfGW456L13_3736 0.89 -1.0
4,204,657 + PfGW456L13_3736 0.89 -1.1
4,204,722 + +1.2
4,204,722 + -0.5
4,204,722 + +0.2
4,204,722 + +0.2
4,204,722 + +0.8
4,204,723 - -2.2
4,204,723 - -0.4
4,204,766 - +1.1
4,204,815 + -0.3
4,204,816 - +0.0
4,204,973 - -0.9
4,204,973 - -1.3
4,204,973 - +0.3
4,204,973 - +0.2
4,204,973 - -0.6
4,204,989 + +0.6
4,204,990 - +0.4
4,204,990 - -0.5
4,205,022 + -0.4
4,205,023 - +0.3
4,205,023 - +0.0
4,205,043 + +1.1
4,205,066 + +0.2
4,205,066 + -1.5
4,205,067 - +1.2
4,205,067 - +1.0
4,205,067 - +0.0
4,205,594 + PfGW456L13_3737 0.38 -0.1
4,205,595 - PfGW456L13_3737 0.38 -0.6
4,205,595 - PfGW456L13_3737 0.38 +0.9

Or see this region's nucleotide sequence