Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1577

Experiment: D-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1575 and PfGW456L13_1576 are separated by 169 nucleotidesPfGW456L13_1576 and PfGW456L13_1577 are separated by 142 nucleotidesPfGW456L13_1577 and PfGW456L13_5189 are separated by 49 nucleotidesPfGW456L13_5189 and PfGW456L13_1578 are separated by 36 nucleotides PfGW456L13_1575 - Peptidyl-tRNA hydrolase (EC 3.1.1.29), at 1,739,718 to 1,740,302 _1575 PfGW456L13_1576 - LSU ribosomal protein L25p, at 1,740,472 to 1,741,071 _1576 PfGW456L13_1577 - Ribose-phosphate pyrophosphokinase (EC 2.7.6.1), at 1,741,214 to 1,742,155 _1577 PfGW456L13_5189 - tRNA-Gln-TTG, at 1,742,205 to 1,742,276 _5189 PfGW456L13_1578 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148), at 1,742,313 to 1,743,164 _1578 Position (kb) 1741 1742 1743Strain fitness (log2 ratio) -1 0 1at 1742.195 kb on - strandat 1742.195 kb on - strandat 1742.279 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (C)
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1,742,195 - +0.3
1,742,195 - -0.0
1,742,279 - -0.3

Or see this region's nucleotide sequence