Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1065

Experiment: D-Serine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_1064 and PfGW456L13_1065 are separated by 79 nucleotidesPfGW456L13_1065 and PfGW456L13_1066 are separated by 12 nucleotides PfGW456L13_1064 - Transketolase (EC 2.2.1.1), at 1,178,563 to 1,180,470 _1064 PfGW456L13_1065 - D-erythrose-4-phosphate dehydrogenase, at 1,180,550 to 1,181,710 _1065 PfGW456L13_1066 - Phosphoglycerate kinase (EC 2.7.2.3), at 1,181,723 to 1,182,886 _1066 Position (kb) 1180 1181 1182Strain fitness (log2 ratio) -3 -2 -1 0 1at 1180.468 kb on + strandat 1180.468 kb on + strandat 1180.469 kb on - strandat 1180.507 kb on + strandat 1180.507 kb on + strandat 1180.601 kb on + strandat 1180.601 kb on + strandat 1180.601 kb on + strandat 1180.601 kb on + strandat 1180.601 kb on + strandat 1180.602 kb on - strandat 1180.602 kb on - strandat 1180.642 kb on + strandat 1180.642 kb on + strandat 1180.642 kb on + strandat 1180.876 kb on + strand, within PfGW456L13_1065at 1180.876 kb on + strand, within PfGW456L13_1065at 1182.632 kb on - strand, within PfGW456L13_1066

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (C)
remove
1,180,468 + -1.2
1,180,468 + +0.9
1,180,469 - -1.6
1,180,507 + -0.4
1,180,507 + +0.2
1,180,601 + -0.2
1,180,601 + -0.2
1,180,601 + -0.8
1,180,601 + -0.6
1,180,601 + +0.9
1,180,602 - -2.4
1,180,602 - -2.9
1,180,642 + -1.2
1,180,642 + -0.8
1,180,642 + -0.2
1,180,876 + PfGW456L13_1065 0.28 -1.4
1,180,876 + PfGW456L13_1065 0.28 -2.8
1,182,632 - PfGW456L13_1066 0.78 -0.9

Or see this region's nucleotide sequence