Strain Fitness in Pseudomonas sp. RS175 around PFR28_04959

Experiment: L-Lysine (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lysine (C) 10 mM
5,654,943	-		PFR28_04957	0.58	-0.8
5,654,950	+		PFR28_04957	0.59	-1.6
5,654,950	+		PFR28_04957	0.59	+0.7
5,654,950	+		PFR28_04957	0.59	-1.5
5,654,951	-		PFR28_04957	0.59	-0.3
5,654,958	-		PFR28_04957	0.60	+0.6
5,655,070	+		PFR28_04957	0.79	+1.3
5,655,193	+				+0.9
5,655,204	+				-1.2
5,655,204	+				-0.5
5,655,204	+				+1.7
5,655,204	+				+0.1
5,655,205	-				+0.6
5,655,205	-				+1.1
5,655,279	+				+0.3
5,655,279	+				+0.1
5,655,279	+				+0.9
5,655,280	-				+0.8
5,655,280	-				+1.8
5,655,280	-				+0.5
5,655,303	+				-0.9
5,655,303	+				-0.2
5,655,303	+				-0.6
5,655,313	+				-0.1
5,655,313	+				+0.7
5,655,313	+				-0.1
5,655,314	-				+1.1
5,655,314	-				+0.3
5,655,352	+				+0.4
5,655,401	+				-0.2
5,655,401	+				-1.1
5,655,401	+				+0.5
5,655,402	-				-0.2
5,655,402	-				+1.3
5,655,402	-				+0.8
5,655,402	-				+0.7
5,655,432	+				+0.6
5,655,432	+				-0.9
5,655,432	+				+0.7
5,655,432	+				-0.0
5,655,432	+				-0.4
5,655,432	+				+1.1
5,655,432	+				+1.4
5,655,433	-				-1.1
5,655,433	-				-1.5
5,655,433	-				-1.9
5,655,433	-				+1.0
5,655,433	-				-1.7
5,655,433	-				+1.2
5,655,433	-				-2.4
5,655,433	-				+1.6
5,655,470	+				-1.7
5,655,471	-				+0.3
5,655,471	-				-1.6
5,655,471	-				+0.7
5,655,474	+				+0.5
5,655,475	-				+1.7
5,655,491	-				+0.3
5,655,527	+				-0.9
5,655,528	-				+0.7
5,655,528	-				-1.2
5,655,528	-				+0.1
5,655,680	-		PFR28_04958	0.54	+0.5
5,655,723	+		PFR28_04958	0.70	-0.7
5,655,770	+		PFR28_04958	0.87	-2.7
5,655,771	-		PFR28_04958	0.88	-1.5
5,655,846	-				+1.3
5,655,866	-				+1.1
5,655,892	-				+1.2
5,655,944	+				-0.9
5,655,944	+				-2.0
5,655,944	+				-0.4
5,655,944	+				+1.7
5,655,944	+				+0.4
5,655,944	+				+0.4
5,655,945	-				+0.0
5,655,945	-				-1.1
5,655,945	-				-0.6
5,655,945	-				+0.5
5,655,945	-				-0.8
5,655,945	-				-0.6
5,655,945	-				+0.3
5,655,957	+				-0.8
5,655,957	+				-1.8
5,655,957	+				-1.1
5,655,958	-				-0.5
5,656,152	+		PFR28_04959	0.11	+0.4
5,656,152	+		PFR28_04959	0.11	-1.0
5,656,153	-		PFR28_04959	0.11	+0.7
5,656,346	-		PFR28_04959	0.21	+0.9
5,656,346	-		PFR28_04959	0.21	-1.9
5,656,549	+		PFR28_04959	0.32	-1.7
5,656,550	-		PFR28_04959	0.32	-0.0
5,656,550	-		PFR28_04959	0.32	+1.7
5,656,671	+		PFR28_04959	0.39	+0.4
5,656,672	-		PFR28_04959	0.39	+0.1
5,657,063	+		PFR28_04959	0.60	-1.0
5,657,063	+		PFR28_04959	0.60	+0.8
5,657,063	+		PFR28_04959	0.60	+0.0
5,657,063	+		PFR28_04959	0.60	+0.0
5,657,063	+		PFR28_04959	0.60	-1.1
5,657,063	+		PFR28_04959	0.60	-0.2
5,657,064	-		PFR28_04959	0.60	+0.5
5,657,064	-		PFR28_04959	0.60	-1.5
5,657,402	+		PFR28_04959	0.78	-0.3
5,657,402	+		PFR28_04959	0.78	+0.6
5,657,402	+		PFR28_04959	0.78	-0.6
5,657,402	+		PFR28_04959	0.78	-2.9
5,657,402	+		PFR28_04959	0.78	-0.1
5,657,403	-		PFR28_04959	0.78	-0.7
5,657,403	-		PFR28_04959	0.78	-1.4
5,657,403	-		PFR28_04959	0.78	-0.3
5,657,448	-		PFR28_04959	0.80	-0.1
5,657,448	-		PFR28_04959	0.80	+0.1
5,657,471	+		PFR28_04959	0.81	-0.1
5,657,532	-		PFR28_04959	0.84	+0.1
5,657,532	-		PFR28_04959	0.84	-0.1
5,657,555	+		PFR28_04959	0.86	+0.5
5,657,556	-		PFR28_04959	0.86	-0.4
5,657,556	-		PFR28_04959	0.86	-0.7
5,657,836	+				+0.7
5,657,837	-				-0.9
5,657,953	+				-1.3
5,657,954	-				+0.6
5,657,954	-				-0.1
5,657,997	-				+0.4
5,658,026	-				+1.5
5,658,026	-				+1.1
5,658,029	+				-1.2
5,658,069	+				+0.9
5,658,069	+				+1.1
5,658,069	+				+1.0
5,658,069	+				-0.7
5,658,069	+				-0.6
5,658,070	-				-0.5
5,658,070	-				-1.3
5,658,070	-				-1.3
5,658,070	-				-0.5
5,658,070	-				-0.5
5,658,070	-				-0.3
5,658,070	-				+1.0
5,658,070	-				+0.6
5,658,070	-				+0.5
5,658,135	+				-1.6
5,658,135	+				-1.1
5,658,136	-				+1.5
5,658,136	-				-0.5
5,658,196	+		PFR28_04960	0.29	+1.2
5,658,196	+		PFR28_04960	0.29	-0.2
5,658,197	-		PFR28_04960	0.30	-0.4
5,658,197	-		PFR28_04960	0.30	+0.2
5,658,315	+		PFR28_04960	0.76	+1.6
5,658,315	+		PFR28_04960	0.76	+0.5
5,658,328	+		PFR28_04960	0.81	+0.5
5,658,328	+		PFR28_04960	0.81	+0.5
5,658,329	-		PFR28_04960	0.82	-0.5
5,658,329	-		PFR28_04960	0.82	-0.5
5,658,329	-		PFR28_04960	0.82	+0.2
5,658,373	+				-0.7
5,658,373	+				-0.0
5,658,373	+				+0.1
5,658,374	-				-0.3
5,658,405	+				-0.6
5,658,405	+				-0.5
5,658,405	+				-0.1
5,658,418	-				-0.8
5,658,423	+				+0.3
5,658,424	-				-0.7
5,658,424	-				-1.5
5,658,432	+				-0.7
5,658,433	-				+0.2
5,658,533	+		PFR28_04961	0.22	+0.3
5,658,533	+		PFR28_04961	0.22	-1.8
5,658,557	+		PFR28_04961	0.26	-0.3
5,658,557	+		PFR28_04961	0.26	+0.9
5,658,557	+		PFR28_04961	0.26	+0.1
5,658,557	+		PFR28_04961	0.26	-2.4
5,658,557	+		PFR28_04961	0.26	+0.7
5,658,557	+		PFR28_04961	0.26	+1.3
5,658,557	+		PFR28_04961	0.26	-0.7
5,658,558	-		PFR28_04961	0.26	-0.9
5,658,593	+		PFR28_04961	0.33	-0.8
5,658,593	+		PFR28_04961	0.33	+0.2
5,658,593	+		PFR28_04961	0.33	+1.3
5,658,593	+		PFR28_04961	0.33	-1.7
5,658,593	+		PFR28_04961	0.33	-0.7
5,658,594	-		PFR28_04961	0.33	-0.3
5,658,624	+		PFR28_04961	0.38	-0.9
5,658,625	-		PFR28_04961	0.38	+1.0
5,658,625	-		PFR28_04961	0.38	-0.4
5,658,782	+		PFR28_04961	0.66	+1.1
5,658,782	+		PFR28_04961	0.66	+0.7
5,658,782	+		PFR28_04961	0.66	-1.3
5,658,782	+		PFR28_04961	0.66	+0.1
5,658,782	+		PFR28_04961	0.66	+0.0
5,658,782	+		PFR28_04961	0.66	-0.4
5,658,782	+		PFR28_04961	0.66	+0.0
5,658,782	+		PFR28_04961	0.66	+1.1
5,658,782	+		PFR28_04961	0.66	-0.2
5,658,782	+		PFR28_04961	0.66	-2.0
5,658,783	-		PFR28_04961	0.66	-0.3
5,658,783	-		PFR28_04961	0.66	-1.1
5,658,783	-		PFR28_04961	0.66	-0.0
5,658,783	-		PFR28_04961	0.66	+1.1
5,658,783	-		PFR28_04961	0.66	+0.9
5,658,797	+		PFR28_04961	0.68	-0.0
5,658,798	-		PFR28_04961	0.69	+0.9