Strain Fitness in Pseudomonas simiae WCS417 around PS417_28125

Experiment: L-Asparagine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_28115 and PS417_28120 are separated by 11 nucleotidesPS417_28120 and PS417_28125 are separated by 333 nucleotidesPS417_28125 and PS417_28130 are separated by 182 nucleotides PS417_28115: PS417_28115 - phosphoribosylaminoimidazole carboxylase, at 6,066,820 to 6,067,905 _28115 PS417_28120: PS417_28120 - N5-carboxyaminoimidazole ribonucleotide mutase, at 6,067,917 to 6,068,408 _28120 PS417_28125: PS417_28125 - LysR family transcriptional regulator, at 6,068,742 to 6,069,650 _28125 PS417_28130: PS417_28130 - aspartate ammonia-lyase, at 6,069,833 to 6,071,257 _28130 Position (kb) 6068 6069 6070Strain fitness (log2 ratio) -3 -2 -1 0 1at 6068.497 kb on - strandat 6068.530 kb on - strandat 6068.537 kb on - strandat 6068.539 kb on + strandat 6068.539 kb on + strandat 6068.539 kb on + strandat 6068.540 kb on - strandat 6068.548 kb on + strandat 6068.549 kb on - strandat 6068.599 kb on - strandat 6068.645 kb on - strandat 6068.693 kb on - strandat 6070.226 kb on + strand, within PS417_28130

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Asparagine (C)
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6,068,497 - -0.6
6,068,530 - -0.6
6,068,537 - -0.0
6,068,539 + -1.1
6,068,539 + -0.4
6,068,539 + -0.1
6,068,540 - -0.3
6,068,548 + -3.7
6,068,549 - -0.7
6,068,599 - +0.2
6,068,645 - +0.6
6,068,693 - -0.2
6,070,226 + PS417_28130 0.28 -1.6

Or see this region's nucleotide sequence