Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25930 and PS417_25935 overlap by 4 nucleotides PS417_25935 and PS417_25940 overlap by 29 nucleotides PS417_25940 and PS417_25950 are separated by 332 nucleotides
PS417_25930: PS417_25930 - pyrroloquinoline quinone biosynthesis protein PqqC, at 5,602,289 to 5,603,041
_25930
PS417_25935: PS417_25935 - pyrroloquinoline quinone biosynthesis protein PqqD, at 5,603,038 to 5,603,313
_25935
PS417_25940: PS417_25940 - pyrroloquinoline quinone biosynthesis protein PqqE, at 5,603,285 to 5,604,436
_25940
PS417_25950: PS417_25950 - acetylornithine aminotransferase, at 5,604,769 to 5,606,031
_25950
Position (kb) 5603
5604
5605 Strain fitness (log2 ratio) -1
0
1
2 at 5602.352 kb on + strand at 5602.352 kb on + strand at 5602.353 kb on - strand at 5602.353 kb on - strand at 5602.353 kb on - strand at 5602.357 kb on + strand at 5602.358 kb on - strand at 5602.385 kb on + strand, within PS417_25930 at 5602.385 kb on + strand, within PS417_25930 at 5602.386 kb on - strand, within PS417_25930 at 5602.386 kb on - strand, within PS417_25930 at 5602.386 kb on - strand, within PS417_25930 at 5602.439 kb on + strand, within PS417_25930 at 5602.440 kb on - strand, within PS417_25930 at 5602.443 kb on - strand, within PS417_25930 at 5602.668 kb on - strand, within PS417_25930 at 5602.808 kb on + strand, within PS417_25930 at 5602.808 kb on + strand, within PS417_25930 at 5602.808 kb on + strand, within PS417_25930 at 5602.809 kb on - strand, within PS417_25930 at 5602.809 kb on - strand, within PS417_25930 at 5602.877 kb on + strand, within PS417_25930 at 5602.877 kb on + strand, within PS417_25930 at 5602.878 kb on - strand, within PS417_25930 at 5602.991 kb on + strand at 5603.024 kb on - strand at 5603.037 kb on + strand at 5603.038 kb on - strand at 5603.361 kb on - strand at 5603.564 kb on + strand, within PS417_25940 at 5603.564 kb on + strand, within PS417_25940 at 5603.564 kb on + strand, within PS417_25940 at 5603.565 kb on - strand, within PS417_25940 at 5603.565 kb on - strand, within PS417_25940 at 5603.565 kb on - strand, within PS417_25940 at 5603.565 kb on - strand, within PS417_25940 at 5603.565 kb on - strand, within PS417_25940 at 5603.566 kb on + strand, within PS417_25940 at 5603.871 kb on - strand, within PS417_25940 at 5604.014 kb on + strand, within PS417_25940 at 5604.014 kb on + strand, within PS417_25940 at 5604.164 kb on + strand, within PS417_25940 at 5604.461 kb on + strand at 5604.461 kb on + strand at 5604.462 kb on - strand at 5604.488 kb on + strand at 5604.488 kb on + strand at 5604.586 kb on - strand at 5604.636 kb on + strand at 5604.636 kb on + strand at 5604.636 kb on + strand at 5604.637 kb on - strand at 5604.637 kb on - strand at 5604.742 kb on + strand at 5604.742 kb on + strand at 5604.946 kb on + strand, within PS417_25950 at 5605.059 kb on - strand, within PS417_25950 at 5605.086 kb on + strand, within PS417_25950 at 5605.158 kb on + strand, within PS417_25950 at 5605.194 kb on + strand, within PS417_25950 at 5605.208 kb on - strand, within PS417_25950 at 5605.274 kb on + strand, within PS417_25950 at 5605.382 kb on + strand, within PS417_25950
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 5,602,352 + -0.1 5,602,352 + +0.1 5,602,353 - +0.6 5,602,353 - -0.1 5,602,353 - -0.5 5,602,357 + +0.7 5,602,358 - -1.2 5,602,385 + PS417_25930 0.13 +0.0 5,602,385 + PS417_25930 0.13 -0.5 5,602,386 - PS417_25930 0.13 +1.5 5,602,386 - PS417_25930 0.13 -0.6 5,602,386 - PS417_25930 0.13 +0.8 5,602,439 + PS417_25930 0.20 -0.1 5,602,440 - PS417_25930 0.20 +0.6 5,602,443 - PS417_25930 0.20 +0.4 5,602,668 - PS417_25930 0.50 +0.6 5,602,808 + PS417_25930 0.69 +0.6 5,602,808 + PS417_25930 0.69 +0.2 5,602,808 + PS417_25930 0.69 +0.1 5,602,809 - PS417_25930 0.69 -0.5 5,602,809 - PS417_25930 0.69 +0.6 5,602,877 + PS417_25930 0.78 +0.6 5,602,877 + PS417_25930 0.78 -0.3 5,602,878 - PS417_25930 0.78 +0.8 5,602,991 + +0.5 5,603,024 - +0.0 5,603,037 + +1.0 5,603,038 - -0.5 5,603,361 - +0.6 5,603,564 + PS417_25940 0.24 -0.5 5,603,564 + PS417_25940 0.24 -0.3 5,603,564 + PS417_25940 0.24 -0.2 5,603,565 - PS417_25940 0.24 -0.2 5,603,565 - PS417_25940 0.24 +0.4 5,603,565 - PS417_25940 0.24 +1.1 5,603,565 - PS417_25940 0.24 -0.0 5,603,565 - PS417_25940 0.24 +0.4 5,603,566 + PS417_25940 0.24 +0.8 5,603,871 - PS417_25940 0.51 +0.0 5,604,014 + PS417_25940 0.63 -0.4 5,604,014 + PS417_25940 0.63 +0.4 5,604,164 + PS417_25940 0.76 -0.8 5,604,461 + -1.6 5,604,461 + +0.0 5,604,462 - -0.6 5,604,488 + -0.4 5,604,488 + +1.8 5,604,586 - -0.8 5,604,636 + -1.1 5,604,636 + +1.0 5,604,636 + -0.0 5,604,637 - +0.2 5,604,637 - +0.0 5,604,742 + +0.8 5,604,742 + -0.4 5,604,946 + PS417_25950 0.14 -0.1 5,605,059 - PS417_25950 0.23 -1.0 5,605,086 + PS417_25950 0.25 +1.4 5,605,158 + PS417_25950 0.31 +0.0 5,605,194 + PS417_25950 0.34 +0.5 5,605,208 - PS417_25950 0.35 +1.0 5,605,274 + PS417_25950 0.40 -0.4 5,605,382 + PS417_25950 0.49 +1.0
Or see this region's nucleotide sequence