Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20060

Experiment: m.b. Tetracycline 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20055 and CA264_20060 are separated by 69 nucleotidesCA264_20060 and CA264_20065 are separated by 50 nucleotidesCA264_20065 and CA264_20070 overlap by 4 nucleotides CA264_20055: CA264_20055 - peptidase M41, at 4,621,910 to 4,624,033 _20055 CA264_20060: CA264_20060 - ribosome silencing factor RsfS, at 4,624,103 to 4,624,477 _20060 CA264_20065: CA264_20065 - biotin--[acetyl-CoA-carboxylase] ligase, at 4,624,528 to 4,625,277 _20065 CA264_20070: CA264_20070 - hypothetical protein, at 4,625,274 to 4,625,846 _20070 Position (kb) 4624 4625Strain fitness (log2 ratio) -1 0 1 2 3at 4623.800 kb on + strand, within CA264_20055at 4623.902 kb on + strandat 4624.042 kb on - strandat 4624.042 kb on - strandat 4624.124 kb on + strandat 4624.124 kb on + strandat 4624.193 kb on + strand, within CA264_20060at 4624.194 kb on - strand, within CA264_20060at 4624.197 kb on - strand, within CA264_20060at 4624.340 kb on + strand, within CA264_20060at 4624.499 kb on + strandat 4624.500 kb on - strandat 4624.521 kb on + strandat 4624.524 kb on + strandat 4624.525 kb on - strandat 4624.525 kb on - strandat 4624.527 kb on + strandat 4624.527 kb on + strandat 4624.527 kb on + strandat 4624.528 kb on - strandat 4625.272 kb on - strandat 4625.385 kb on + strand, within CA264_20070

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml
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4,623,800 + CA264_20055 0.89 -0.6
4,623,902 + -0.5
4,624,042 - +0.2
4,624,042 - +0.5
4,624,124 + -0.2
4,624,124 + -0.2
4,624,193 + CA264_20060 0.24 +0.5
4,624,194 - CA264_20060 0.24 +2.4
4,624,197 - CA264_20060 0.25 +1.1
4,624,340 + CA264_20060 0.63 -1.1
4,624,499 + +0.7
4,624,500 - +0.5
4,624,521 + +0.6
4,624,524 + +0.7
4,624,525 - +2.0
4,624,525 - +0.2
4,624,527 + -0.0
4,624,527 + -0.2
4,624,527 + +0.0
4,624,528 - +2.8
4,625,272 - +0.3
4,625,385 + CA264_20070 0.19 -0.9

Or see this region's nucleotide sequence