Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19940

Experiment: m.b. Tetracycline 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19935 and CA264_19940 are separated by 172 nucleotidesCA264_19940 and CA264_19945 are separated by 6 nucleotidesCA264_19945 and CA264_19950 are separated by 47 nucleotidesCA264_19950 and CA264_19955 are separated by 113 nucleotides CA264_19935: CA264_19935 - sodium:calcium symporter, at 4,596,819 to 4,598,471 _19935 CA264_19940: CA264_19940 - DNA uptake-like protein, at 4,598,644 to 4,599,588 _19940 CA264_19945: CA264_19945 - hypothetical protein, at 4,599,595 to 4,599,780 _19945 CA264_19950: CA264_19950 - hypothetical protein, at 4,599,828 to 4,600,121 _19950 CA264_19955: CA264_19955 - SAM-dependent methyltransferase, at 4,600,235 to 4,601,074 _19955 Position (kb) 4598 4599 4600Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4597.826 kb on + strand, within CA264_19935at 4597.913 kb on + strand, within CA264_19935at 4597.977 kb on - strand, within CA264_19935at 4597.995 kb on + strand, within CA264_19935at 4597.996 kb on - strand, within CA264_19935at 4598.013 kb on + strand, within CA264_19935at 4598.031 kb on - strand, within CA264_19935at 4598.292 kb on - strand, within CA264_19935at 4598.299 kb on + strand, within CA264_19935at 4598.300 kb on - strand, within CA264_19935at 4598.387 kb on + strandat 4598.388 kb on - strandat 4598.392 kb on + strandat 4598.393 kb on - strandat 4598.393 kb on - strandat 4598.404 kb on + strandat 4598.430 kb on + strandat 4598.469 kb on + strandat 4598.494 kb on - strandat 4598.533 kb on - strandat 4598.591 kb on + strandat 4598.626 kb on - strandat 4598.727 kb on - strandat 4598.770 kb on + strand, within CA264_19940at 4598.793 kb on + strand, within CA264_19940at 4598.872 kb on + strand, within CA264_19940at 4598.993 kb on + strand, within CA264_19940at 4599.007 kb on + strand, within CA264_19940at 4599.008 kb on - strand, within CA264_19940at 4599.070 kb on + strand, within CA264_19940at 4599.071 kb on - strand, within CA264_19940at 4599.074 kb on + strand, within CA264_19940at 4599.075 kb on - strand, within CA264_19940at 4599.103 kb on + strand, within CA264_19940at 4599.103 kb on + strand, within CA264_19940at 4599.106 kb on - strand, within CA264_19940at 4599.106 kb on - strand, within CA264_19940at 4599.106 kb on - strand, within CA264_19940at 4599.119 kb on - strand, within CA264_19940at 4599.278 kb on - strand, within CA264_19940at 4599.303 kb on + strand, within CA264_19940at 4599.303 kb on + strand, within CA264_19940at 4599.328 kb on + strand, within CA264_19940at 4599.328 kb on + strand, within CA264_19940at 4599.368 kb on - strand, within CA264_19940at 4599.369 kb on + strand, within CA264_19940at 4599.370 kb on - strand, within CA264_19940at 4599.404 kb on + strand, within CA264_19940at 4599.405 kb on - strand, within CA264_19940at 4599.448 kb on + strand, within CA264_19940at 4599.505 kb on + strandat 4599.506 kb on - strandat 4599.533 kb on + strandat 4599.534 kb on - strandat 4599.557 kb on - strandat 4599.627 kb on - strand, within CA264_19945at 4599.646 kb on + strand, within CA264_19945at 4599.646 kb on + strand, within CA264_19945at 4599.649 kb on + strand, within CA264_19945at 4599.712 kb on + strand, within CA264_19945at 4599.712 kb on + strand, within CA264_19945at 4599.712 kb on + strand, within CA264_19945at 4599.713 kb on - strandat 4599.713 kb on - strand, within CA264_19945at 4599.783 kb on + strandat 4599.784 kb on - strandat 4599.785 kb on + strandat 4599.786 kb on - strandat 4599.809 kb on - strandat 4599.830 kb on - strandat 4599.873 kb on - strand, within CA264_19950at 4599.982 kb on + strand, within CA264_19950at 4599.987 kb on + strand, within CA264_19950at 4599.991 kb on + strand, within CA264_19950at 4599.991 kb on + strand, within CA264_19950at 4600.051 kb on + strand, within CA264_19950at 4600.052 kb on - strand, within CA264_19950at 4600.057 kb on + strand, within CA264_19950at 4600.074 kb on - strand, within CA264_19950at 4600.074 kb on - strand, within CA264_19950at 4600.083 kb on - strand, within CA264_19950at 4600.083 kb on - strand, within CA264_19950at 4600.083 kb on - strand, within CA264_19950at 4600.167 kb on + strandat 4600.168 kb on - strandat 4600.170 kb on - strandat 4600.269 kb on + strandat 4600.361 kb on + strand, within CA264_19955at 4600.379 kb on + strand, within CA264_19955at 4600.447 kb on - strand, within CA264_19955at 4600.588 kb on - strand, within CA264_19955

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml
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4,597,826 + CA264_19935 0.61 -0.2
4,597,913 + CA264_19935 0.66 +0.2
4,597,977 - CA264_19935 0.70 +0.5
4,597,995 + CA264_19935 0.71 -0.4
4,597,996 - CA264_19935 0.71 -0.9
4,598,013 + CA264_19935 0.72 +0.8
4,598,031 - CA264_19935 0.73 -0.5
4,598,292 - CA264_19935 0.89 +0.1
4,598,299 + CA264_19935 0.90 +0.6
4,598,300 - CA264_19935 0.90 +0.0
4,598,387 + -0.2
4,598,388 - +0.3
4,598,392 + -0.2
4,598,393 - -0.0
4,598,393 - +1.4
4,598,404 + -1.0
4,598,430 + -0.0
4,598,469 + -2.6
4,598,494 - +0.1
4,598,533 - -0.4
4,598,591 + +0.6
4,598,626 - +0.8
4,598,727 - +0.8
4,598,770 + CA264_19940 0.13 -0.3
4,598,793 + CA264_19940 0.16 -1.1
4,598,872 + CA264_19940 0.24 -3.0
4,598,993 + CA264_19940 0.37 -2.9
4,599,007 + CA264_19940 0.38 +0.2
4,599,008 - CA264_19940 0.39 +0.3
4,599,070 + CA264_19940 0.45 +0.2
4,599,071 - CA264_19940 0.45 +0.1
4,599,074 + CA264_19940 0.46 -0.4
4,599,075 - CA264_19940 0.46 +0.1
4,599,103 + CA264_19940 0.49 +0.2
4,599,103 + CA264_19940 0.49 +0.0
4,599,106 - CA264_19940 0.49 +0.6
4,599,106 - CA264_19940 0.49 -0.6
4,599,106 - CA264_19940 0.49 -1.8
4,599,119 - CA264_19940 0.50 -0.2
4,599,278 - CA264_19940 0.67 +0.8
4,599,303 + CA264_19940 0.70 +0.1
4,599,303 + CA264_19940 0.70 +0.5
4,599,328 + CA264_19940 0.72 -0.6
4,599,328 + CA264_19940 0.72 -0.1
4,599,368 - CA264_19940 0.77 -0.8
4,599,369 + CA264_19940 0.77 -0.2
4,599,370 - CA264_19940 0.77 +1.4
4,599,404 + CA264_19940 0.80 +0.8
4,599,405 - CA264_19940 0.81 -1.5
4,599,448 + CA264_19940 0.85 -0.3
4,599,505 + -0.2
4,599,506 - +1.5
4,599,533 + +0.6
4,599,534 - +0.8
4,599,557 - +0.3
4,599,627 - CA264_19945 0.17 +0.6
4,599,646 + CA264_19945 0.27 -0.3
4,599,646 + CA264_19945 0.27 -0.3
4,599,649 + CA264_19945 0.29 +0.1
4,599,712 + CA264_19945 0.63 +0.0
4,599,712 + CA264_19945 0.63 +0.3
4,599,712 + CA264_19945 0.63 +1.8
4,599,713 - +0.2
4,599,713 - CA264_19945 0.63 -0.7
4,599,783 + +0.6
4,599,784 - -0.6
4,599,785 + +0.8
4,599,786 - -0.3
4,599,809 - -0.0
4,599,830 - +0.5
4,599,873 - CA264_19950 0.15 +0.8
4,599,982 + CA264_19950 0.52 +0.5
4,599,987 + CA264_19950 0.54 +0.1
4,599,991 + CA264_19950 0.55 +1.0
4,599,991 + CA264_19950 0.55 -0.6
4,600,051 + CA264_19950 0.76 +2.8
4,600,052 - CA264_19950 0.76 +0.8
4,600,057 + CA264_19950 0.78 +0.2
4,600,074 - CA264_19950 0.84 -0.2
4,600,074 - CA264_19950 0.84 +0.2
4,600,083 - CA264_19950 0.87 -0.2
4,600,083 - CA264_19950 0.87 +1.1
4,600,083 - CA264_19950 0.87 -0.3
4,600,167 + -0.1
4,600,168 - +0.1
4,600,170 - +0.1
4,600,269 + +0.1
4,600,361 + CA264_19955 0.15 -0.1
4,600,379 + CA264_19955 0.17 +0.1
4,600,447 - CA264_19955 0.25 +1.4
4,600,588 - CA264_19955 0.42 +0.2

Or see this region's nucleotide sequence