Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_16590

Experiment: m.b. Tetracycline 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_16580 and CA264_16585 are separated by 424 nucleotidesCA264_16585 and CA264_16590 are separated by 194 nucleotidesCA264_16590 and CA264_16595 are separated by 67 nucleotidesCA264_16595 and CA264_16600 are separated by 184 nucleotides CA264_16580: CA264_16580 - aminoacyl-tRNA hydrolase, at 3,854,438 to 3,854,848 _16580 CA264_16585: CA264_16585 - hypothetical protein, at 3,855,273 to 3,855,653 _16585 CA264_16590: CA264_16590 - site-2 protease family protein, at 3,855,848 to 3,856,927 _16590 CA264_16595: CA264_16595 - hypothetical protein, at 3,856,995 to 3,857,309 _16595 CA264_16600: CA264_16600 - alpha/beta hydrolase, at 3,857,494 to 3,858,300 _16600 Position (kb) 3855 3856 3857Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3854.849 kb on - strandat 3854.851 kb on - strandat 3854.851 kb on - strandat 3854.860 kb on + strandat 3854.862 kb on + strandat 3854.863 kb on - strandat 3854.912 kb on - strandat 3854.934 kb on + strandat 3854.936 kb on + strandat 3854.936 kb on + strandat 3854.936 kb on + strandat 3854.937 kb on - strandat 3854.998 kb on + strandat 3854.999 kb on - strandat 3855.037 kb on + strandat 3855.038 kb on - strandat 3855.049 kb on + strandat 3855.050 kb on - strandat 3855.106 kb on - strandat 3855.164 kb on - strandat 3855.164 kb on - strandat 3855.213 kb on - strandat 3855.215 kb on + strandat 3855.216 kb on - strandat 3855.217 kb on + strandat 3855.218 kb on - strandat 3855.218 kb on - strandat 3855.229 kb on + strandat 3855.254 kb on + strandat 3855.254 kb on + strandat 3855.254 kb on + strandat 3855.254 kb on + strandat 3855.255 kb on - strandat 3855.255 kb on - strandat 3855.255 kb on - strandat 3855.356 kb on + strand, within CA264_16585at 3855.377 kb on + strand, within CA264_16585at 3855.682 kb on - strandat 3855.759 kb on + strandat 3855.867 kb on + strandat 3855.868 kb on - strandat 3855.876 kb on + strandat 3855.885 kb on + strandat 3855.946 kb on - strandat 3856.271 kb on + strand, within CA264_16590at 3856.369 kb on + strand, within CA264_16590at 3856.441 kb on + strand, within CA264_16590at 3856.577 kb on + strand, within CA264_16590at 3856.578 kb on - strand, within CA264_16590at 3856.578 kb on - strand, within CA264_16590at 3856.651 kb on + strand, within CA264_16590at 3856.956 kb on - strandat 3856.987 kb on + strandat 3856.987 kb on + strandat 3857.014 kb on + strandat 3857.018 kb on - strandat 3857.018 kb on - strandat 3857.021 kb on - strandat 3857.111 kb on - strand, within CA264_16595at 3857.125 kb on + strand, within CA264_16595at 3857.126 kb on - strand, within CA264_16595at 3857.126 kb on - strand, within CA264_16595at 3857.131 kb on + strand, within CA264_16595at 3857.131 kb on + strand, within CA264_16595at 3857.131 kb on + strand, within CA264_16595at 3857.131 kb on + strand, within CA264_16595at 3857.132 kb on - strand, within CA264_16595at 3857.144 kb on - strand, within CA264_16595at 3857.213 kb on - strand, within CA264_16595at 3857.252 kb on + strand, within CA264_16595at 3857.253 kb on - strand, within CA264_16595at 3857.258 kb on - strand, within CA264_16595at 3857.258 kb on - strand, within CA264_16595at 3857.264 kb on - strand, within CA264_16595at 3857.264 kb on - strand, within CA264_16595at 3857.279 kb on - strandat 3857.307 kb on + strandat 3857.308 kb on - strandat 3857.313 kb on - strandat 3857.379 kb on + strandat 3857.380 kb on - strandat 3857.396 kb on + strandat 3857.397 kb on - strandat 3857.428 kb on - strandat 3857.458 kb on + strandat 3857.525 kb on + strandat 3857.526 kb on - strandat 3857.527 kb on + strandat 3857.528 kb on - strandat 3857.528 kb on - strandat 3857.530 kb on + strandat 3857.530 kb on + strandat 3857.531 kb on - strandat 3857.531 kb on - strandat 3857.531 kb on - strandat 3857.598 kb on + strand, within CA264_16600at 3857.623 kb on - strand, within CA264_16600at 3857.638 kb on + strand, within CA264_16600at 3857.638 kb on + strand, within CA264_16600at 3857.638 kb on + strand, within CA264_16600at 3857.640 kb on + strand, within CA264_16600at 3857.765 kb on + strand, within CA264_16600at 3857.766 kb on - strand, within CA264_16600at 3857.771 kb on + strand, within CA264_16600at 3857.818 kb on + strand, within CA264_16600at 3857.867 kb on + strand, within CA264_16600at 3857.868 kb on - strand, within CA264_16600at 3857.876 kb on - strand, within CA264_16600at 3857.913 kb on - strand, within CA264_16600

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml
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3,854,849 - +1.1
3,854,851 - +0.2
3,854,851 - +0.0
3,854,860 + +0.0
3,854,862 + +0.1
3,854,863 - +1.1
3,854,912 - +1.1
3,854,934 + +1.9
3,854,936 + +0.3
3,854,936 + +0.5
3,854,936 + +0.4
3,854,937 - -0.4
3,854,998 + +1.9
3,854,999 - +0.4
3,855,037 + +0.1
3,855,038 - +1.5
3,855,049 + +1.0
3,855,050 - +1.6
3,855,106 - +0.4
3,855,164 - -0.6
3,855,164 - +0.7
3,855,213 - +0.4
3,855,215 + +1.2
3,855,216 - +0.8
3,855,217 + -0.2
3,855,218 - +0.6
3,855,218 - +1.8
3,855,229 + -2.1
3,855,254 + -0.2
3,855,254 + +1.1
3,855,254 + +0.2
3,855,254 + +0.3
3,855,255 - +1.2
3,855,255 - +1.2
3,855,255 - +2.3
3,855,356 + CA264_16585 0.22 -0.2
3,855,377 + CA264_16585 0.27 +0.6
3,855,682 - +0.5
3,855,759 + +1.2
3,855,867 + -0.2
3,855,868 - +1.3
3,855,876 + -1.0
3,855,885 + +0.7
3,855,946 - +1.0
3,856,271 + CA264_16590 0.39 +1.5
3,856,369 + CA264_16590 0.48 +1.8
3,856,441 + CA264_16590 0.55 -0.6
3,856,577 + CA264_16590 0.68 +0.9
3,856,578 - CA264_16590 0.68 +2.8
3,856,578 - CA264_16590 0.68 +0.8
3,856,651 + CA264_16590 0.74 +2.1
3,856,956 - +0.8
3,856,987 + +0.6
3,856,987 + +1.1
3,857,014 + +0.3
3,857,018 - +2.6
3,857,018 - +1.6
3,857,021 - -0.1
3,857,111 - CA264_16595 0.37 -0.2
3,857,125 + CA264_16595 0.41 +0.3
3,857,126 - CA264_16595 0.42 +1.1
3,857,126 - CA264_16595 0.42 +0.9
3,857,131 + CA264_16595 0.43 +2.3
3,857,131 + CA264_16595 0.43 -0.2
3,857,131 + CA264_16595 0.43 -0.2
3,857,131 + CA264_16595 0.43 -0.1
3,857,132 - CA264_16595 0.43 +1.5
3,857,144 - CA264_16595 0.47 +0.3
3,857,213 - CA264_16595 0.69 -0.2
3,857,252 + CA264_16595 0.82 +0.7
3,857,253 - CA264_16595 0.82 +0.9
3,857,258 - CA264_16595 0.83 +0.8
3,857,258 - CA264_16595 0.83 +1.0
3,857,264 - CA264_16595 0.85 +0.5
3,857,264 - CA264_16595 0.85 +0.9
3,857,279 - +0.7
3,857,307 + +0.8
3,857,308 - +0.6
3,857,313 - +0.3
3,857,379 + +0.7
3,857,380 - +1.5
3,857,396 + -1.4
3,857,397 - +1.8
3,857,428 - +0.2
3,857,458 + +0.5
3,857,525 + +1.4
3,857,526 - +0.9
3,857,527 + +0.1
3,857,528 - +0.5
3,857,528 - +0.8
3,857,530 + +0.6
3,857,530 + -0.0
3,857,531 - +1.0
3,857,531 - +0.8
3,857,531 - -0.2
3,857,598 + CA264_16600 0.13 +0.4
3,857,623 - CA264_16600 0.16 -0.5
3,857,638 + CA264_16600 0.18 -0.3
3,857,638 + CA264_16600 0.18 +0.2
3,857,638 + CA264_16600 0.18 +0.1
3,857,640 + CA264_16600 0.18 +1.2
3,857,765 + CA264_16600 0.34 +0.4
3,857,766 - CA264_16600 0.34 +2.8
3,857,771 + CA264_16600 0.34 -0.5
3,857,818 + CA264_16600 0.40 +0.3
3,857,867 + CA264_16600 0.46 +0.4
3,857,868 - CA264_16600 0.46 -1.1
3,857,876 - CA264_16600 0.47 +1.0
3,857,913 - CA264_16600 0.52 +0.2

Or see this region's nucleotide sequence