Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_16100

Experiment: m.b. Tetracycline 0.006 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_16090 and CA264_16095 are separated by 448 nucleotidesCA264_16095 and CA264_16100 are separated by 132 nucleotidesCA264_16100 and CA264_16105 are separated by 34 nucleotides CA264_16090: CA264_16090 - DNA-binding protein, at 3,747,418 to 3,748,419 _16090 CA264_16095: CA264_16095 - tRNA-Asn, at 3,748,868 to 3,748,941 _16095 CA264_16100: CA264_16100 - hypothetical protein, at 3,749,074 to 3,749,451 _16100 CA264_16105: CA264_16105 - 3-hydroxybutyryl-CoA dehydrogenase, at 3,749,486 to 3,750,346 _16105 Position (kb) 3749 3750Strain fitness (log2 ratio) -2 -1 0 1 2at 3748.419 kb on + strandat 3748.419 kb on + strandat 3748.616 kb on + strandat 3748.655 kb on - strandat 3748.685 kb on + strandat 3748.692 kb on - strandat 3748.699 kb on + strandat 3748.699 kb on + strandat 3748.700 kb on - strandat 3748.747 kb on - strandat 3748.770 kb on + strandat 3748.777 kb on - strandat 3749.305 kb on - strand, within CA264_16100at 3749.378 kb on - strand, within CA264_16100at 3749.410 kb on + strand, within CA264_16100at 3749.496 kb on + strandat 3749.496 kb on + strandat 3749.496 kb on + strandat 3749.500 kb on + strandat 3749.501 kb on - strandat 3749.503 kb on - strandat 3749.586 kb on + strand, within CA264_16105at 3749.626 kb on + strand, within CA264_16105at 3749.627 kb on - strand, within CA264_16105at 3749.629 kb on + strand, within CA264_16105at 3749.671 kb on + strand, within CA264_16105at 3749.841 kb on - strand, within CA264_16105at 3750.276 kb on - strandat 3750.312 kb on - strandat 3750.315 kb on - strandat 3750.315 kb on - strandat 3750.321 kb on - strandat 3750.321 kb on - strandat 3750.347 kb on - strandat 3750.389 kb on - strandat 3750.397 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml
remove
3,748,419 + +0.5
3,748,419 + -1.4
3,748,616 + -0.5
3,748,655 - -1.6
3,748,685 + -0.0
3,748,692 - +0.4
3,748,699 + -0.2
3,748,699 + +0.1
3,748,700 - +0.2
3,748,747 - -0.6
3,748,770 + +1.2
3,748,777 - +0.2
3,749,305 - CA264_16100 0.61 +0.8
3,749,378 - CA264_16100 0.80 -1.8
3,749,410 + CA264_16100 0.89 -0.9
3,749,496 + -0.7
3,749,496 + -0.2
3,749,496 + +1.4
3,749,500 + +0.5
3,749,501 - -0.1
3,749,503 - -0.9
3,749,586 + CA264_16105 0.12 -0.1
3,749,626 + CA264_16105 0.16 -1.2
3,749,627 - CA264_16105 0.16 -2.7
3,749,629 + CA264_16105 0.17 -0.4
3,749,671 + CA264_16105 0.21 +1.8
3,749,841 - CA264_16105 0.41 -0.3
3,750,276 - +1.0
3,750,312 - -0.2
3,750,315 - -0.2
3,750,315 - +0.3
3,750,321 - -0.2
3,750,321 - -0.1
3,750,347 - +0.2
3,750,389 - -1.6
3,750,397 - -0.1

Or see this region's nucleotide sequence