Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13140

Experiment: m.b. Tetracycline 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13130 and CA264_13135 are separated by 159 nucleotidesCA264_13135 and CA264_13140 are separated by 125 nucleotidesCA264_13140 and CA264_13145 are separated by 123 nucleotidesCA264_13145 and CA264_13150 are separated by 140 nucleotides CA264_13130: CA264_13130 - peptidase S1, at 3,061,642 to 3,062,730 _13130 CA264_13135: CA264_13135 - hypothetical protein, at 3,062,890 to 3,063,603 _13135 CA264_13140: CA264_13140 - hypothetical protein, at 3,063,729 to 3,064,421 _13140 CA264_13145: CA264_13145 - hypothetical protein, at 3,064,545 to 3,065,198 _13145 CA264_13150: CA264_13150 - hypothetical protein, at 3,065,339 to 3,065,869 _13150 Position (kb) 3063 3064 3065Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3062.729 kb on - strandat 3062.733 kb on - strandat 3062.733 kb on - strandat 3062.742 kb on - strandat 3062.834 kb on - strandat 3062.838 kb on + strandat 3062.849 kb on - strandat 3062.852 kb on - strandat 3062.852 kb on - strandat 3062.871 kb on + strandat 3062.873 kb on + strandat 3062.874 kb on - strandat 3062.879 kb on - strandat 3062.889 kb on + strandat 3062.909 kb on + strandat 3062.909 kb on + strandat 3062.909 kb on + strandat 3062.915 kb on + strandat 3062.931 kb on + strandat 3062.931 kb on + strandat 3062.936 kb on + strandat 3062.936 kb on + strandat 3062.937 kb on - strandat 3062.937 kb on - strandat 3062.962 kb on - strand, within CA264_13135at 3062.962 kb on - strand, within CA264_13135at 3062.964 kb on + strand, within CA264_13135at 3062.964 kb on + strand, within CA264_13135at 3062.965 kb on - strand, within CA264_13135at 3062.965 kb on - strand, within CA264_13135at 3062.965 kb on - strand, within CA264_13135at 3063.043 kb on + strand, within CA264_13135at 3063.043 kb on + strand, within CA264_13135at 3063.043 kb on + strand, within CA264_13135at 3063.043 kb on + strand, within CA264_13135at 3063.044 kb on - strand, within CA264_13135at 3063.044 kb on - strand, within CA264_13135at 3063.049 kb on + strand, within CA264_13135at 3063.049 kb on + strand, within CA264_13135at 3063.049 kb on + strand, within CA264_13135at 3063.049 kb on + strand, within CA264_13135at 3063.049 kb on + strand, within CA264_13135at 3063.102 kb on + strand, within CA264_13135at 3063.102 kb on + strand, within CA264_13135at 3063.119 kb on - strand, within CA264_13135at 3063.158 kb on - strand, within CA264_13135at 3063.164 kb on + strand, within CA264_13135at 3063.164 kb on + strand, within CA264_13135at 3063.165 kb on - strand, within CA264_13135at 3063.165 kb on - strand, within CA264_13135at 3063.176 kb on + strand, within CA264_13135at 3063.177 kb on - strand, within CA264_13135at 3063.251 kb on + strand, within CA264_13135at 3063.256 kb on - strand, within CA264_13135at 3063.299 kb on + strand, within CA264_13135at 3063.300 kb on - strand, within CA264_13135at 3063.442 kb on + strand, within CA264_13135at 3063.442 kb on + strand, within CA264_13135at 3063.442 kb on + strand, within CA264_13135at 3063.443 kb on - strand, within CA264_13135at 3063.507 kb on + strand, within CA264_13135at 3063.543 kb on - strandat 3063.618 kb on - strandat 3063.618 kb on - strandat 3063.707 kb on + strandat 3063.707 kb on + strandat 3063.764 kb on - strandat 3063.764 kb on - strandat 3063.907 kb on - strand, within CA264_13140at 3063.907 kb on - strand, within CA264_13140at 3063.928 kb on + strand, within CA264_13140at 3063.946 kb on + strand, within CA264_13140at 3063.951 kb on + strand, within CA264_13140at 3063.951 kb on + strand, within CA264_13140at 3063.951 kb on + strand, within CA264_13140at 3063.952 kb on - strand, within CA264_13140at 3063.969 kb on - strand, within CA264_13140at 3063.990 kb on + strand, within CA264_13140at 3063.991 kb on - strand, within CA264_13140at 3063.991 kb on - strand, within CA264_13140at 3063.991 kb on - strand, within CA264_13140at 3064.041 kb on - strand, within CA264_13140at 3064.187 kb on - strand, within CA264_13140at 3064.211 kb on - strand, within CA264_13140at 3064.215 kb on - strand, within CA264_13140at 3064.238 kb on + strand, within CA264_13140at 3064.279 kb on + strand, within CA264_13140at 3064.279 kb on + strand, within CA264_13140at 3064.280 kb on - strand, within CA264_13140at 3064.309 kb on - strand, within CA264_13140at 3064.348 kb on + strand, within CA264_13140at 3064.392 kb on - strandat 3064.482 kb on + strandat 3064.483 kb on - strandat 3064.483 kb on - strandat 3064.484 kb on + strandat 3064.502 kb on - strandat 3064.539 kb on + strandat 3064.539 kb on + strandat 3064.539 kb on + strandat 3064.540 kb on - strandat 3064.544 kb on + strandat 3064.544 kb on + strandat 3064.561 kb on + strandat 3064.566 kb on - strandat 3064.792 kb on + strand, within CA264_13145at 3064.792 kb on + strand, within CA264_13145at 3064.793 kb on - strand, within CA264_13145at 3064.843 kb on + strand, within CA264_13145at 3064.887 kb on + strand, within CA264_13145at 3064.978 kb on + strand, within CA264_13145at 3065.018 kb on + strand, within CA264_13145at 3065.204 kb on - strandat 3065.215 kb on - strandat 3065.235 kb on + strandat 3065.239 kb on + strandat 3065.277 kb on - strandat 3065.277 kb on - strandat 3065.277 kb on - strandat 3065.319 kb on - strandat 3065.325 kb on + strandat 3065.338 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml
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3,062,729 - -0.4
3,062,733 - -0.4
3,062,733 - +0.2
3,062,742 - +0.3
3,062,834 - -0.4
3,062,838 + +1.8
3,062,849 - -0.2
3,062,852 - -1.1
3,062,852 - +0.5
3,062,871 + -0.2
3,062,873 + -0.6
3,062,874 - -0.2
3,062,879 - +0.5
3,062,889 + -0.4
3,062,909 + -0.5
3,062,909 + +0.1
3,062,909 + -0.3
3,062,915 + -1.2
3,062,931 + +0.7
3,062,931 + +0.2
3,062,936 + +0.8
3,062,936 + +0.1
3,062,937 - +0.7
3,062,937 - +0.3
3,062,962 - CA264_13135 0.10 -0.4
3,062,962 - CA264_13135 0.10 +1.8
3,062,964 + CA264_13135 0.10 +1.5
3,062,964 + CA264_13135 0.10 -0.2
3,062,965 - CA264_13135 0.11 -1.4
3,062,965 - CA264_13135 0.11 +2.8
3,062,965 - CA264_13135 0.11 +0.8
3,063,043 + CA264_13135 0.21 -0.8
3,063,043 + CA264_13135 0.21 -0.0
3,063,043 + CA264_13135 0.21 -0.8
3,063,043 + CA264_13135 0.21 -0.1
3,063,044 - CA264_13135 0.22 +0.1
3,063,044 - CA264_13135 0.22 -0.9
3,063,049 + CA264_13135 0.22 +0.2
3,063,049 + CA264_13135 0.22 -0.1
3,063,049 + CA264_13135 0.22 +0.4
3,063,049 + CA264_13135 0.22 -1.4
3,063,049 + CA264_13135 0.22 +0.8
3,063,102 + CA264_13135 0.30 +0.8
3,063,102 + CA264_13135 0.30 -0.2
3,063,119 - CA264_13135 0.32 -0.2
3,063,158 - CA264_13135 0.38 -0.9
3,063,164 + CA264_13135 0.38 -1.8
3,063,164 + CA264_13135 0.38 +1.0
3,063,165 - CA264_13135 0.39 +1.8
3,063,165 - CA264_13135 0.39 -0.1
3,063,176 + CA264_13135 0.40 -0.0
3,063,177 - CA264_13135 0.40 -1.5
3,063,251 + CA264_13135 0.51 -0.2
3,063,256 - CA264_13135 0.51 -2.4
3,063,299 + CA264_13135 0.57 -0.0
3,063,300 - CA264_13135 0.57 -0.8
3,063,442 + CA264_13135 0.77 -0.5
3,063,442 + CA264_13135 0.77 +0.4
3,063,442 + CA264_13135 0.77 +0.8
3,063,443 - CA264_13135 0.77 -1.1
3,063,507 + CA264_13135 0.86 +0.5
3,063,543 - -0.4
3,063,618 - -0.3
3,063,618 - -0.2
3,063,707 + -0.8
3,063,707 + -0.5
3,063,764 - -0.1
3,063,764 - -0.5
3,063,907 - CA264_13140 0.26 +1.2
3,063,907 - CA264_13140 0.26 -0.5
3,063,928 + CA264_13140 0.29 +0.1
3,063,946 + CA264_13140 0.31 +0.1
3,063,951 + CA264_13140 0.32 -0.3
3,063,951 + CA264_13140 0.32 -0.4
3,063,951 + CA264_13140 0.32 -0.2
3,063,952 - CA264_13140 0.32 -0.2
3,063,969 - CA264_13140 0.35 +0.8
3,063,990 + CA264_13140 0.38 -0.2
3,063,991 - CA264_13140 0.38 +0.2
3,063,991 - CA264_13140 0.38 +0.1
3,063,991 - CA264_13140 0.38 -0.0
3,064,041 - CA264_13140 0.45 +0.4
3,064,187 - CA264_13140 0.66 +0.3
3,064,211 - CA264_13140 0.70 +0.1
3,064,215 - CA264_13140 0.70 -0.8
3,064,238 + CA264_13140 0.73 -0.2
3,064,279 + CA264_13140 0.79 +0.5
3,064,279 + CA264_13140 0.79 +0.7
3,064,280 - CA264_13140 0.80 -0.2
3,064,309 - CA264_13140 0.84 +0.1
3,064,348 + CA264_13140 0.89 -0.1
3,064,392 - -0.9
3,064,482 + -0.1
3,064,483 - -0.7
3,064,483 - -0.6
3,064,484 + +0.1
3,064,502 - +0.1
3,064,539 + +0.8
3,064,539 + +0.1
3,064,539 + +0.3
3,064,540 - +0.9
3,064,544 + -0.2
3,064,544 + -0.8
3,064,561 + +0.1
3,064,566 - +0.4
3,064,792 + CA264_13145 0.38 -0.2
3,064,792 + CA264_13145 0.38 -0.5
3,064,793 - CA264_13145 0.38 +1.2
3,064,843 + CA264_13145 0.46 -0.1
3,064,887 + CA264_13145 0.52 -0.5
3,064,978 + CA264_13145 0.66 -0.3
3,065,018 + CA264_13145 0.72 +0.5
3,065,204 - -0.6
3,065,215 - +0.5
3,065,235 + +1.8
3,065,239 + +0.3
3,065,277 - +0.5
3,065,277 - +0.3
3,065,277 - -2.0
3,065,319 - +0.7
3,065,325 + +0.3
3,065,338 + +0.4

Or see this region's nucleotide sequence