Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_11515 and CA264_11520 are separated by 261 nucleotides CA264_11520 and CA264_11525 overlap by 4 nucleotides CA264_11525 and CA264_11530 are separated by 449 nucleotides
CA264_11515: CA264_11515 - RNA polymerase sigma-70 factor, at 2,679,972 to 2,680,532
_11515
CA264_11520: CA264_11520 - hypothetical protein, at 2,680,794 to 2,681,192
_11520
CA264_11525: CA264_11525 - hypothetical protein, at 2,681,189 to 2,681,557
_11525
CA264_11530: CA264_11530 - recombinase XerD, at 2,682,007 to 2,683,305
_11530
Position (kb)
2681
2682 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2680.190 kb on + strand, within CA264_11515 at 2680.190 kb on + strand, within CA264_11515 at 2680.190 kb on + strand, within CA264_11515 at 2680.191 kb on - strand, within CA264_11515 at 2680.191 kb on - strand, within CA264_11515 at 2680.216 kb on + strand, within CA264_11515 at 2680.268 kb on + strand, within CA264_11515 at 2680.268 kb on + strand, within CA264_11515 at 2680.268 kb on + strand, within CA264_11515 at 2680.320 kb on - strand, within CA264_11515 at 2680.321 kb on + strand, within CA264_11515 at 2680.321 kb on + strand, within CA264_11515 at 2680.322 kb on - strand, within CA264_11515 at 2680.328 kb on - strand, within CA264_11515 at 2680.358 kb on + strand, within CA264_11515 at 2680.450 kb on - strand, within CA264_11515 at 2680.459 kb on + strand, within CA264_11515 at 2680.466 kb on + strand, within CA264_11515 at 2680.484 kb on - strand at 2680.575 kb on - strand at 2680.579 kb on - strand at 2680.581 kb on + strand at 2680.581 kb on + strand at 2680.591 kb on + strand at 2680.625 kb on + strand at 2680.659 kb on - strand at 2680.659 kb on - strand at 2680.715 kb on + strand at 2680.742 kb on + strand at 2680.743 kb on - strand at 2680.745 kb on + strand at 2680.745 kb on + strand at 2680.750 kb on + strand at 2680.751 kb on - strand at 2680.751 kb on - strand at 2680.897 kb on + strand, within CA264_11520 at 2680.899 kb on + strand, within CA264_11520 at 2680.900 kb on - strand, within CA264_11520 at 2681.005 kb on + strand, within CA264_11520 at 2681.005 kb on + strand, within CA264_11520 at 2681.005 kb on + strand, within CA264_11520 at 2681.005 kb on + strand, within CA264_11520 at 2681.005 kb on + strand, within CA264_11520 at 2681.006 kb on - strand, within CA264_11520 at 2681.006 kb on - strand, within CA264_11520 at 2681.046 kb on + strand, within CA264_11520 at 2681.074 kb on + strand, within CA264_11520 at 2681.096 kb on + strand, within CA264_11520 at 2681.096 kb on + strand, within CA264_11520 at 2681.097 kb on - strand, within CA264_11520 at 2681.229 kb on + strand, within CA264_11525 at 2681.245 kb on - strand, within CA264_11525 at 2681.247 kb on + strand, within CA264_11525 at 2681.248 kb on - strand, within CA264_11525 at 2681.424 kb on + strand, within CA264_11525 at 2681.425 kb on - strand, within CA264_11525 at 2681.425 kb on - strand, within CA264_11525 at 2681.459 kb on + strand, within CA264_11525 at 2681.459 kb on + strand, within CA264_11525 at 2681.460 kb on - strand, within CA264_11525 at 2681.460 kb on - strand, within CA264_11525 at 2681.464 kb on + strand, within CA264_11525 at 2681.465 kb on - strand, within CA264_11525 at 2681.556 kb on - strand at 2681.608 kb on + strand at 2681.630 kb on - strand at 2681.679 kb on - strand at 2681.767 kb on - strand at 2682.007 kb on - strand at 2682.068 kb on - strand at 2682.075 kb on - strand at 2682.087 kb on + strand at 2682.088 kb on - strand at 2682.091 kb on + strand at 2682.096 kb on - strand at 2682.124 kb on + strand at 2682.389 kb on - strand, within CA264_11530 at 2682.391 kb on - strand, within CA264_11530 at 2682.391 kb on - strand, within CA264_11530 at 2682.408 kb on + strand, within CA264_11530 at 2682.530 kb on + strand, within CA264_11530 at 2682.534 kb on + strand, within CA264_11530 at 2682.534 kb on + strand, within CA264_11530 at 2682.534 kb on + strand, within CA264_11530 at 2682.535 kb on - strand, within CA264_11530
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 2,680,190 + CA264_11515 0.39 -0.7 2,680,190 + CA264_11515 0.39 +0.1 2,680,190 + CA264_11515 0.39 +0.3 2,680,191 - CA264_11515 0.39 -1.3 2,680,191 - CA264_11515 0.39 -0.3 2,680,216 + CA264_11515 0.43 +0.3 2,680,268 + CA264_11515 0.53 -0.8 2,680,268 + CA264_11515 0.53 -1.4 2,680,268 + CA264_11515 0.53 +0.4 2,680,320 - CA264_11515 0.62 +0.2 2,680,321 + CA264_11515 0.62 -0.0 2,680,321 + CA264_11515 0.62 +0.8 2,680,322 - CA264_11515 0.62 -0.8 2,680,328 - CA264_11515 0.63 -0.2 2,680,358 + CA264_11515 0.69 -1.8 2,680,450 - CA264_11515 0.85 -0.2 2,680,459 + CA264_11515 0.87 +0.0 2,680,466 + CA264_11515 0.88 -0.0 2,680,484 - +1.5 2,680,575 - -0.0 2,680,579 - -0.0 2,680,581 + -0.5 2,680,581 + -0.6 2,680,591 + -0.6 2,680,625 + +0.1 2,680,659 - -0.8 2,680,659 - -1.2 2,680,715 + +0.4 2,680,742 + -0.2 2,680,743 - -0.2 2,680,745 + -0.3 2,680,745 + -0.1 2,680,750 + +0.3 2,680,751 - -0.1 2,680,751 - +0.0 2,680,897 + CA264_11520 0.26 -0.2 2,680,899 + CA264_11520 0.26 -0.4 2,680,900 - CA264_11520 0.27 -1.7 2,681,005 + CA264_11520 0.53 -0.4 2,681,005 + CA264_11520 0.53 -0.3 2,681,005 + CA264_11520 0.53 +0.5 2,681,005 + CA264_11520 0.53 +0.8 2,681,005 + CA264_11520 0.53 -0.2 2,681,006 - CA264_11520 0.53 -0.5 2,681,006 - CA264_11520 0.53 -2.2 2,681,046 + CA264_11520 0.63 -0.1 2,681,074 + CA264_11520 0.70 +0.3 2,681,096 + CA264_11520 0.76 -0.6 2,681,096 + CA264_11520 0.76 +0.3 2,681,097 - CA264_11520 0.76 -1.2 2,681,229 + CA264_11525 0.11 -0.1 2,681,245 - CA264_11525 0.15 -0.2 2,681,247 + CA264_11525 0.16 +0.2 2,681,248 - CA264_11525 0.16 -0.4 2,681,424 + CA264_11525 0.64 -1.1 2,681,425 - CA264_11525 0.64 +0.1 2,681,425 - CA264_11525 0.64 -0.2 2,681,459 + CA264_11525 0.73 +0.0 2,681,459 + CA264_11525 0.73 -0.6 2,681,460 - CA264_11525 0.73 -0.8 2,681,460 - CA264_11525 0.73 -0.6 2,681,464 + CA264_11525 0.75 -0.2 2,681,465 - CA264_11525 0.75 +1.3 2,681,556 - +1.3 2,681,608 + -0.4 2,681,630 - +0.0 2,681,679 - -0.4 2,681,767 - -0.3 2,682,007 - -0.2 2,682,068 - +1.1 2,682,075 - +0.5 2,682,087 + -1.1 2,682,088 - +1.8 2,682,091 + -0.2 2,682,096 - -1.2 2,682,124 + -0.6 2,682,389 - CA264_11530 0.29 -0.6 2,682,391 - CA264_11530 0.30 +1.7 2,682,391 - CA264_11530 0.30 +0.3 2,682,408 + CA264_11530 0.31 -0.1 2,682,530 + CA264_11530 0.40 +0.9 2,682,534 + CA264_11530 0.41 -0.1 2,682,534 + CA264_11530 0.41 -0.2 2,682,534 + CA264_11530 0.41 -0.1 2,682,535 - CA264_11530 0.41 +1.4
Or see this region's nucleotide sequence