Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07185

Experiment: m.b. Tetracycline 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07180 and CA264_07185 overlap by 8 nucleotidesCA264_07185 and CA264_07190 are separated by 292 nucleotidesCA264_07190 and CA264_07195 are separated by 77 nucleotides CA264_07180: CA264_07180 - transporter, at 1,659,468 to 1,660,811 _07180 CA264_07185: CA264_07185 - TetR family transcriptional regulator, at 1,660,804 to 1,661,439 _07185 CA264_07190: CA264_07190 - hypothetical protein, at 1,661,732 to 1,662,331 _07190 CA264_07195: CA264_07195 - hypothetical protein, at 1,662,409 to 1,662,903 _07195 Position (kb) 1660 1661 1662Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 1659.865 kb on + strand, within CA264_07180at 1659.866 kb on - strand, within CA264_07180at 1659.903 kb on + strand, within CA264_07180at 1659.908 kb on - strand, within CA264_07180at 1659.963 kb on + strand, within CA264_07180at 1660.005 kb on + strand, within CA264_07180at 1660.020 kb on + strand, within CA264_07180at 1660.021 kb on - strand, within CA264_07180at 1660.039 kb on + strand, within CA264_07180at 1660.228 kb on - strand, within CA264_07180at 1660.228 kb on - strand, within CA264_07180at 1660.324 kb on + strand, within CA264_07180at 1660.352 kb on + strand, within CA264_07180at 1660.382 kb on + strand, within CA264_07180at 1660.507 kb on + strand, within CA264_07180at 1660.510 kb on + strand, within CA264_07180at 1660.510 kb on + strand, within CA264_07180at 1660.510 kb on + strand, within CA264_07180at 1660.511 kb on - strand, within CA264_07180at 1660.542 kb on - strand, within CA264_07180at 1660.568 kb on - strand, within CA264_07180at 1660.571 kb on + strand, within CA264_07180at 1660.571 kb on + strand, within CA264_07180at 1660.572 kb on - strand, within CA264_07180at 1660.572 kb on - strand, within CA264_07180at 1660.573 kb on + strand, within CA264_07180at 1660.806 kb on - strandat 1660.826 kb on - strandat 1660.836 kb on + strandat 1660.851 kb on + strandat 1660.955 kb on + strand, within CA264_07185at 1660.969 kb on + strand, within CA264_07185at 1660.996 kb on + strand, within CA264_07185at 1660.996 kb on + strand, within CA264_07185at 1661.004 kb on + strand, within CA264_07185at 1661.080 kb on - strand, within CA264_07185at 1661.081 kb on + strand, within CA264_07185at 1661.081 kb on + strand, within CA264_07185at 1661.082 kb on - strand, within CA264_07185at 1661.133 kb on + strand, within CA264_07185at 1661.168 kb on + strand, within CA264_07185at 1661.169 kb on - strand, within CA264_07185at 1661.169 kb on - strand, within CA264_07185at 1661.169 kb on - strand, within CA264_07185at 1661.301 kb on - strand, within CA264_07185at 1661.307 kb on + strand, within CA264_07185at 1661.307 kb on + strand, within CA264_07185at 1661.307 kb on + strand, within CA264_07185at 1661.307 kb on + strand, within CA264_07185at 1661.308 kb on - strand, within CA264_07185at 1661.500 kb on + strandat 1661.583 kb on + strandat 1661.594 kb on + strandat 1661.594 kb on + strandat 1661.594 kb on + strandat 1661.594 kb on + strandat 1661.658 kb on - strandat 1661.665 kb on + strandat 1661.672 kb on - strandat 1661.682 kb on + strandat 1661.739 kb on + strandat 1661.756 kb on + strandat 1661.756 kb on + strandat 1661.783 kb on - strandat 1661.824 kb on + strand, within CA264_07190at 1661.825 kb on - strand, within CA264_07190at 1661.864 kb on - strand, within CA264_07190at 1661.884 kb on - strand, within CA264_07190at 1661.950 kb on + strand, within CA264_07190at 1661.983 kb on + strand, within CA264_07190at 1661.983 kb on + strand, within CA264_07190at 1662.000 kb on + strand, within CA264_07190at 1662.000 kb on + strand, within CA264_07190at 1662.004 kb on + strand, within CA264_07190at 1662.004 kb on + strand, within CA264_07190at 1662.004 kb on + strand, within CA264_07190at 1662.004 kb on + strand, within CA264_07190at 1662.004 kb on + strand, within CA264_07190at 1662.005 kb on - strand, within CA264_07190at 1662.005 kb on - strand, within CA264_07190at 1662.010 kb on - strand, within CA264_07190at 1662.026 kb on + strand, within CA264_07190at 1662.026 kb on + strand, within CA264_07190at 1662.033 kb on + strand, within CA264_07190at 1662.034 kb on - strand, within CA264_07190at 1662.089 kb on + strand, within CA264_07190at 1662.116 kb on - strand, within CA264_07190at 1662.252 kb on - strand, within CA264_07190at 1662.376 kb on - strandat 1662.376 kb on - strandat 1662.402 kb on + strandat 1662.405 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml
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1,659,865 + CA264_07180 0.30 -0.1
1,659,866 - CA264_07180 0.30 -0.7
1,659,903 + CA264_07180 0.32 -1.6
1,659,908 - CA264_07180 0.33 -1.1
1,659,963 + CA264_07180 0.37 +1.2
1,660,005 + CA264_07180 0.40 -0.6
1,660,020 + CA264_07180 0.41 -0.9
1,660,021 - CA264_07180 0.41 +0.2
1,660,039 + CA264_07180 0.42 -2.2
1,660,228 - CA264_07180 0.57 +0.5
1,660,228 - CA264_07180 0.57 -0.5
1,660,324 + CA264_07180 0.64 +0.2
1,660,352 + CA264_07180 0.66 +0.1
1,660,382 + CA264_07180 0.68 -0.7
1,660,507 + CA264_07180 0.77 +0.2
1,660,510 + CA264_07180 0.78 -0.2
1,660,510 + CA264_07180 0.78 +0.5
1,660,510 + CA264_07180 0.78 +1.8
1,660,511 - CA264_07180 0.78 +0.6
1,660,542 - CA264_07180 0.80 +0.2
1,660,568 - CA264_07180 0.82 +1.3
1,660,571 + CA264_07180 0.82 -1.2
1,660,571 + CA264_07180 0.82 +1.3
1,660,572 - CA264_07180 0.82 +0.2
1,660,572 - CA264_07180 0.82 +0.1
1,660,573 + CA264_07180 0.82 +0.9
1,660,806 - +1.0
1,660,826 - +0.1
1,660,836 + +1.0
1,660,851 + +1.2
1,660,955 + CA264_07185 0.24 +1.1
1,660,969 + CA264_07185 0.26 +1.8
1,660,996 + CA264_07185 0.30 +2.3
1,660,996 + CA264_07185 0.30 +1.7
1,661,004 + CA264_07185 0.31 +0.8
1,661,080 - CA264_07185 0.43 +6.3
1,661,081 + CA264_07185 0.44 +0.9
1,661,081 + CA264_07185 0.44 +1.5
1,661,082 - CA264_07185 0.44 +6.7
1,661,133 + CA264_07185 0.52 +1.3
1,661,168 + CA264_07185 0.57 +2.8
1,661,169 - CA264_07185 0.57 +5.0
1,661,169 - CA264_07185 0.57 +6.8
1,661,169 - CA264_07185 0.57 +5.7
1,661,301 - CA264_07185 0.78 +6.8
1,661,307 + CA264_07185 0.79 +1.1
1,661,307 + CA264_07185 0.79 +2.2
1,661,307 + CA264_07185 0.79 +1.9
1,661,307 + CA264_07185 0.79 +0.5
1,661,308 - CA264_07185 0.79 +6.2
1,661,500 + +0.6
1,661,583 + +1.0
1,661,594 + +2.1
1,661,594 + +0.1
1,661,594 + -1.7
1,661,594 + +1.0
1,661,658 - +5.2
1,661,665 + -1.1
1,661,672 - +4.4
1,661,682 + -1.6
1,661,739 + -0.4
1,661,756 + -0.2
1,661,756 + -0.4
1,661,783 - +4.1
1,661,824 + CA264_07190 0.15 +0.2
1,661,825 - CA264_07190 0.15 +4.4
1,661,864 - CA264_07190 0.22 +3.4
1,661,884 - CA264_07190 0.25 +2.7
1,661,950 + CA264_07190 0.36 -0.6
1,661,983 + CA264_07190 0.42 -0.7
1,661,983 + CA264_07190 0.42 +0.8
1,662,000 + CA264_07190 0.45 -0.9
1,662,000 + CA264_07190 0.45 +0.2
1,662,004 + CA264_07190 0.45 -0.7
1,662,004 + CA264_07190 0.45 -0.4
1,662,004 + CA264_07190 0.45 -0.5
1,662,004 + CA264_07190 0.45 +0.0
1,662,004 + CA264_07190 0.45 +1.4
1,662,005 - CA264_07190 0.46 +0.9
1,662,005 - CA264_07190 0.46 +2.9
1,662,010 - CA264_07190 0.46 +3.5
1,662,026 + CA264_07190 0.49 -0.5
1,662,026 + CA264_07190 0.49 -1.0
1,662,033 + CA264_07190 0.50 -0.2
1,662,034 - CA264_07190 0.50 +2.1
1,662,089 + CA264_07190 0.59 +0.5
1,662,116 - CA264_07190 0.64 +2.3
1,662,252 - CA264_07190 0.87 +2.9
1,662,376 - +0.8
1,662,376 - +0.0
1,662,402 + +0.3
1,662,405 + +0.8

Or see this region's nucleotide sequence