Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07175

Experiment: m.b. Tetracycline 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07170 and CA264_07175 are separated by 4 nucleotidesCA264_07175 and CA264_07180 are separated by 14 nucleotides CA264_07170: CA264_07170 - MFS transporter, at 1,656,855 to 1,658,402 _07170 CA264_07175: CA264_07175 - secretion protein HlyD, at 1,658,407 to 1,659,453 _07175 CA264_07180: CA264_07180 - transporter, at 1,659,468 to 1,660,811 _07180 Position (kb) 1658 1659 1660Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1657.460 kb on + strand, within CA264_07170at 1657.466 kb on + strand, within CA264_07170at 1657.466 kb on + strand, within CA264_07170at 1657.561 kb on + strand, within CA264_07170at 1657.595 kb on + strand, within CA264_07170at 1657.596 kb on - strand, within CA264_07170at 1657.635 kb on + strand, within CA264_07170at 1657.670 kb on + strand, within CA264_07170at 1657.699 kb on - strandat 1657.718 kb on - strand, within CA264_07170at 1657.858 kb on + strand, within CA264_07170at 1657.921 kb on + strand, within CA264_07170at 1657.921 kb on + strand, within CA264_07170at 1657.922 kb on - strand, within CA264_07170at 1657.922 kb on - strand, within CA264_07170at 1657.925 kb on + strand, within CA264_07170at 1657.932 kb on - strand, within CA264_07170at 1657.936 kb on + strand, within CA264_07170at 1657.937 kb on - strand, within CA264_07170at 1657.937 kb on - strand, within CA264_07170at 1658.007 kb on + strand, within CA264_07170at 1658.007 kb on + strand, within CA264_07170at 1658.007 kb on + strand, within CA264_07170at 1658.007 kb on + strand, within CA264_07170at 1658.008 kb on - strand, within CA264_07170at 1658.008 kb on - strand, within CA264_07170at 1658.082 kb on + strand, within CA264_07170at 1658.085 kb on - strand, within CA264_07170at 1658.085 kb on - strand, within CA264_07170at 1658.096 kb on + strand, within CA264_07170at 1658.148 kb on - strand, within CA264_07170at 1658.160 kb on - strand, within CA264_07170at 1658.174 kb on - strand, within CA264_07170at 1658.265 kb on - strandat 1658.288 kb on + strandat 1658.289 kb on - strandat 1658.295 kb on + strandat 1658.295 kb on + strandat 1658.296 kb on - strandat 1658.321 kb on + strandat 1658.322 kb on - strandat 1658.404 kb on + strandat 1658.405 kb on - strandat 1658.408 kb on + strandat 1658.409 kb on - strandat 1658.435 kb on + strandat 1658.436 kb on - strandat 1658.437 kb on + strandat 1658.437 kb on + strandat 1658.437 kb on + strandat 1658.437 kb on + strandat 1658.437 kb on + strandat 1658.438 kb on - strandat 1658.438 kb on - strandat 1658.513 kb on - strand, within CA264_07175at 1658.513 kb on - strand, within CA264_07175at 1658.591 kb on + strand, within CA264_07175at 1658.605 kb on + strand, within CA264_07175at 1658.605 kb on + strand, within CA264_07175at 1658.695 kb on + strand, within CA264_07175at 1658.696 kb on - strand, within CA264_07175at 1658.699 kb on + strand, within CA264_07175at 1658.813 kb on + strand, within CA264_07175at 1658.874 kb on + strand, within CA264_07175at 1658.946 kb on - strand, within CA264_07175at 1659.000 kb on + strand, within CA264_07175at 1659.000 kb on + strand, within CA264_07175at 1659.003 kb on + strand, within CA264_07175at 1659.004 kb on - strand, within CA264_07175at 1659.036 kb on + strand, within CA264_07175at 1659.065 kb on - strand, within CA264_07175at 1659.065 kb on - strand, within CA264_07175at 1659.136 kb on + strand, within CA264_07175at 1659.190 kb on + strand, within CA264_07175at 1659.268 kb on - strand, within CA264_07175at 1659.268 kb on - strand, within CA264_07175at 1659.268 kb on - strand, within CA264_07175at 1659.354 kb on - strandat 1659.359 kb on + strandat 1659.359 kb on + strandat 1659.391 kb on + strandat 1659.394 kb on - strandat 1659.439 kb on - strandat 1659.469 kb on + strandat 1659.473 kb on + strandat 1659.474 kb on - strandat 1659.477 kb on + strandat 1659.503 kb on + strandat 1659.503 kb on + strandat 1659.505 kb on + strandat 1659.508 kb on + strandat 1659.509 kb on - strandat 1659.707 kb on - strand, within CA264_07180at 1659.756 kb on - strand, within CA264_07180at 1659.865 kb on + strand, within CA264_07180at 1659.866 kb on - strand, within CA264_07180at 1659.903 kb on + strand, within CA264_07180at 1659.908 kb on - strand, within CA264_07180at 1659.963 kb on + strand, within CA264_07180at 1660.005 kb on + strand, within CA264_07180at 1660.020 kb on + strand, within CA264_07180at 1660.021 kb on - strand, within CA264_07180at 1660.039 kb on + strand, within CA264_07180at 1660.228 kb on - strand, within CA264_07180at 1660.228 kb on - strand, within CA264_07180at 1660.324 kb on + strand, within CA264_07180at 1660.352 kb on + strand, within CA264_07180at 1660.382 kb on + strand, within CA264_07180

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml
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1,657,460 + CA264_07170 0.39 -0.3
1,657,466 + CA264_07170 0.39 -1.3
1,657,466 + CA264_07170 0.39 -0.3
1,657,561 + CA264_07170 0.46 +0.4
1,657,595 + CA264_07170 0.48 -0.4
1,657,596 - CA264_07170 0.48 -0.0
1,657,635 + CA264_07170 0.50 +0.5
1,657,670 + CA264_07170 0.53 -1.2
1,657,699 - -0.8
1,657,718 - CA264_07170 0.56 +0.2
1,657,858 + CA264_07170 0.65 +0.1
1,657,921 + CA264_07170 0.69 +0.8
1,657,921 + CA264_07170 0.69 +1.3
1,657,922 - CA264_07170 0.69 +0.5
1,657,922 - CA264_07170 0.69 -0.0
1,657,925 + CA264_07170 0.69 -0.2
1,657,932 - CA264_07170 0.70 +0.6
1,657,936 + CA264_07170 0.70 +1.3
1,657,937 - CA264_07170 0.70 -1.0
1,657,937 - CA264_07170 0.70 +0.8
1,658,007 + CA264_07170 0.74 -0.2
1,658,007 + CA264_07170 0.74 +1.6
1,658,007 + CA264_07170 0.74 +1.2
1,658,007 + CA264_07170 0.74 +1.8
1,658,008 - CA264_07170 0.74 +0.6
1,658,008 - CA264_07170 0.74 +0.5
1,658,082 + CA264_07170 0.79 +0.2
1,658,085 - CA264_07170 0.79 +0.3
1,658,085 - CA264_07170 0.79 -0.7
1,658,096 + CA264_07170 0.80 -1.5
1,658,148 - CA264_07170 0.84 -1.0
1,658,160 - CA264_07170 0.84 -0.3
1,658,174 - CA264_07170 0.85 -0.3
1,658,265 - -0.8
1,658,288 + +0.8
1,658,289 - +0.8
1,658,295 + -0.3
1,658,295 + +0.4
1,658,296 - +0.3
1,658,321 + -0.1
1,658,322 - -0.4
1,658,404 + +1.9
1,658,405 - +0.5
1,658,408 + +3.3
1,658,409 - -0.2
1,658,435 + +0.1
1,658,436 - +1.0
1,658,437 + +0.5
1,658,437 + -0.2
1,658,437 + +1.5
1,658,437 + -0.1
1,658,437 + +0.5
1,658,438 - -0.4
1,658,438 - +0.4
1,658,513 - CA264_07175 0.10 -1.2
1,658,513 - CA264_07175 0.10 +0.3
1,658,591 + CA264_07175 0.18 -0.2
1,658,605 + CA264_07175 0.19 +0.2
1,658,605 + CA264_07175 0.19 -0.0
1,658,695 + CA264_07175 0.28 -0.6
1,658,696 - CA264_07175 0.28 +0.1
1,658,699 + CA264_07175 0.28 -0.1
1,658,813 + CA264_07175 0.39 -0.3
1,658,874 + CA264_07175 0.45 +0.7
1,658,946 - CA264_07175 0.51 -0.1
1,659,000 + CA264_07175 0.57 -0.2
1,659,000 + CA264_07175 0.57 +0.0
1,659,003 + CA264_07175 0.57 -0.1
1,659,004 - CA264_07175 0.57 -3.1
1,659,036 + CA264_07175 0.60 +0.2
1,659,065 - CA264_07175 0.63 -0.8
1,659,065 - CA264_07175 0.63 -1.6
1,659,136 + CA264_07175 0.70 -1.7
1,659,190 + CA264_07175 0.75 -0.4
1,659,268 - CA264_07175 0.82 -0.9
1,659,268 - CA264_07175 0.82 -0.3
1,659,268 - CA264_07175 0.82 -1.1
1,659,354 - +0.1
1,659,359 + -0.6
1,659,359 + -2.4
1,659,391 + -0.5
1,659,394 - -0.2
1,659,439 - +0.4
1,659,469 + +0.1
1,659,473 + +0.8
1,659,474 - -1.6
1,659,477 + +0.5
1,659,503 + +0.8
1,659,503 + +0.1
1,659,505 + -0.4
1,659,508 + +1.1
1,659,509 - +0.5
1,659,707 - CA264_07180 0.18 +0.8
1,659,756 - CA264_07180 0.21 -1.2
1,659,865 + CA264_07180 0.30 -0.1
1,659,866 - CA264_07180 0.30 -0.7
1,659,903 + CA264_07180 0.32 -1.6
1,659,908 - CA264_07180 0.33 -1.1
1,659,963 + CA264_07180 0.37 +1.2
1,660,005 + CA264_07180 0.40 -0.6
1,660,020 + CA264_07180 0.41 -0.9
1,660,021 - CA264_07180 0.41 +0.2
1,660,039 + CA264_07180 0.42 -2.2
1,660,228 - CA264_07180 0.57 +0.5
1,660,228 - CA264_07180 0.57 -0.5
1,660,324 + CA264_07180 0.64 +0.2
1,660,352 + CA264_07180 0.66 +0.1
1,660,382 + CA264_07180 0.68 -0.7

Or see this region's nucleotide sequence