Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06190

Experiment: m.b. Tetracycline 0.006 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_06180 and CA264_06185 overlap by 11 nucleotidesCA264_06185 and CA264_06190 are separated by 36 nucleotidesCA264_06190 and CA264_06195 are separated by 163 nucleotidesCA264_06195 and CA264_06200 are separated by 589 nucleotides CA264_06180: CA264_06180 - pseudouridylate synthase, at 1,440,530 to 1,441,276 _06180 CA264_06185: CA264_06185 - hypothetical protein, at 1,441,266 to 1,441,613 _06185 CA264_06190: CA264_06190 - molecular chaperone DnaJ, at 1,441,650 to 1,442,606 _06190 CA264_06195: CA264_06195 - YqaE/Pmp3 family membrane protein, at 1,442,770 to 1,442,952 _06195 CA264_06200: CA264_06200 - N-formylglutamate amidohydrolase, at 1,443,542 to 1,444,270 _06200 Position (kb) 1441 1442 1443Strain fitness (log2 ratio) -2 -1 0 1 2at 1440.658 kb on - strand, within CA264_06180at 1440.786 kb on - strand, within CA264_06180at 1440.786 kb on - strand, within CA264_06180at 1440.806 kb on + strand, within CA264_06180at 1440.808 kb on + strand, within CA264_06180at 1440.953 kb on + strand, within CA264_06180at 1440.964 kb on + strand, within CA264_06180at 1440.988 kb on + strand, within CA264_06180at 1441.029 kb on - strand, within CA264_06180at 1441.100 kb on + strand, within CA264_06180at 1441.100 kb on + strand, within CA264_06180at 1441.101 kb on - strand, within CA264_06180at 1441.101 kb on - strand, within CA264_06180at 1441.164 kb on + strand, within CA264_06180at 1441.165 kb on - strand, within CA264_06180at 1441.165 kb on - strand, within CA264_06180at 1441.165 kb on - strand, within CA264_06180at 1441.186 kb on + strand, within CA264_06180at 1441.186 kb on + strand, within CA264_06180at 1441.187 kb on - strand, within CA264_06180at 1441.187 kb on - strand, within CA264_06180at 1441.187 kb on - strand, within CA264_06180at 1441.274 kb on + strandat 1441.275 kb on - strandat 1441.297 kb on - strandat 1441.297 kb on - strandat 1441.355 kb on - strand, within CA264_06185at 1441.387 kb on - strand, within CA264_06185at 1441.413 kb on + strand, within CA264_06185at 1441.413 kb on + strand, within CA264_06185at 1441.414 kb on - strand, within CA264_06185at 1441.414 kb on - strand, within CA264_06185at 1441.414 kb on - strand, within CA264_06185at 1441.414 kb on - strand, within CA264_06185at 1441.414 kb on - strand, within CA264_06185at 1441.455 kb on + strand, within CA264_06185at 1441.456 kb on - strand, within CA264_06185at 1441.535 kb on - strand, within CA264_06185at 1441.538 kb on - strand, within CA264_06185at 1441.538 kb on - strand, within CA264_06185at 1441.538 kb on - strand, within CA264_06185at 1441.714 kb on - strandat 1441.714 kb on - strandat 1441.714 kb on - strandat 1441.714 kb on - strandat 1441.731 kb on + strandat 1441.737 kb on + strandat 1441.743 kb on + strandat 1441.778 kb on - strand, within CA264_06190at 1441.779 kb on + strand, within CA264_06190at 1441.780 kb on - strand, within CA264_06190at 1441.841 kb on + strand, within CA264_06190at 1441.865 kb on + strand, within CA264_06190at 1441.865 kb on + strand, within CA264_06190at 1441.866 kb on - strand, within CA264_06190at 1441.866 kb on - strand, within CA264_06190at 1441.869 kb on + strand, within CA264_06190at 1441.869 kb on + strand, within CA264_06190at 1441.870 kb on - strand, within CA264_06190at 1441.890 kb on + strand, within CA264_06190at 1441.900 kb on + strand, within CA264_06190at 1441.901 kb on - strand, within CA264_06190at 1441.901 kb on - strand, within CA264_06190at 1441.966 kb on - strand, within CA264_06190at 1441.977 kb on - strand, within CA264_06190at 1442.122 kb on + strand, within CA264_06190at 1442.148 kb on - strand, within CA264_06190at 1442.159 kb on - strand, within CA264_06190at 1442.339 kb on - strand, within CA264_06190at 1442.339 kb on - strand, within CA264_06190at 1442.342 kb on - strand, within CA264_06190at 1442.410 kb on + strand, within CA264_06190at 1442.410 kb on + strand, within CA264_06190at 1442.600 kb on - strandat 1442.663 kb on - strandat 1442.703 kb on + strandat 1442.765 kb on - strandat 1442.794 kb on + strand, within CA264_06195at 1442.914 kb on + strand, within CA264_06195at 1442.915 kb on - strand, within CA264_06195at 1442.923 kb on + strand, within CA264_06195at 1443.100 kb on + strandat 1443.100 kb on + strandat 1443.101 kb on - strandat 1443.276 kb on + strandat 1443.318 kb on - strandat 1443.365 kb on - strandat 1443.400 kb on - strandat 1443.404 kb on + strandat 1443.404 kb on + strandat 1443.404 kb on + strandat 1443.405 kb on - strandat 1443.405 kb on - strandat 1443.415 kb on - strandat 1443.430 kb on - strandat 1443.438 kb on - strandat 1443.502 kb on + strandat 1443.503 kb on - strandat 1443.503 kb on - strandat 1443.507 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml
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1,440,658 - CA264_06180 0.17 -0.1
1,440,786 - CA264_06180 0.34 -0.1
1,440,786 - CA264_06180 0.34 +0.8
1,440,806 + CA264_06180 0.37 -0.9
1,440,808 + CA264_06180 0.37 +0.8
1,440,953 + CA264_06180 0.57 -0.2
1,440,964 + CA264_06180 0.58 -0.2
1,440,988 + CA264_06180 0.61 +2.0
1,441,029 - CA264_06180 0.67 -1.2
1,441,100 + CA264_06180 0.76 -0.4
1,441,100 + CA264_06180 0.76 -0.1
1,441,101 - CA264_06180 0.76 +0.8
1,441,101 - CA264_06180 0.76 +0.8
1,441,164 + CA264_06180 0.85 +0.4
1,441,165 - CA264_06180 0.85 -0.1
1,441,165 - CA264_06180 0.85 -0.4
1,441,165 - CA264_06180 0.85 -0.3
1,441,186 + CA264_06180 0.88 -0.7
1,441,186 + CA264_06180 0.88 -0.5
1,441,187 - CA264_06180 0.88 +2.6
1,441,187 - CA264_06180 0.88 +0.5
1,441,187 - CA264_06180 0.88 +0.8
1,441,274 + -0.2
1,441,275 - +0.1
1,441,297 - +0.0
1,441,297 - -0.2
1,441,355 - CA264_06185 0.26 -0.8
1,441,387 - CA264_06185 0.35 +0.3
1,441,413 + CA264_06185 0.42 +0.4
1,441,413 + CA264_06185 0.42 +0.8
1,441,414 - CA264_06185 0.43 -0.8
1,441,414 - CA264_06185 0.43 -0.1
1,441,414 - CA264_06185 0.43 +0.3
1,441,414 - CA264_06185 0.43 +0.4
1,441,414 - CA264_06185 0.43 +0.6
1,441,455 + CA264_06185 0.54 -0.5
1,441,456 - CA264_06185 0.55 -0.7
1,441,535 - CA264_06185 0.77 +0.8
1,441,538 - CA264_06185 0.78 -0.7
1,441,538 - CA264_06185 0.78 +0.5
1,441,538 - CA264_06185 0.78 +0.1
1,441,714 - +0.4
1,441,714 - -2.5
1,441,714 - -0.5
1,441,714 - -0.0
1,441,731 + +0.2
1,441,737 + +1.4
1,441,743 + +1.7
1,441,778 - CA264_06190 0.13 +0.2
1,441,779 + CA264_06190 0.13 +0.2
1,441,780 - CA264_06190 0.14 -0.5
1,441,841 + CA264_06190 0.20 -0.9
1,441,865 + CA264_06190 0.22 -0.0
1,441,865 + CA264_06190 0.22 +0.3
1,441,866 - CA264_06190 0.23 +0.2
1,441,866 - CA264_06190 0.23 -1.8
1,441,869 + CA264_06190 0.23 -0.9
1,441,869 + CA264_06190 0.23 -0.4
1,441,870 - CA264_06190 0.23 -0.3
1,441,890 + CA264_06190 0.25 -1.4
1,441,900 + CA264_06190 0.26 +0.1
1,441,901 - CA264_06190 0.26 -0.4
1,441,901 - CA264_06190 0.26 +0.2
1,441,966 - CA264_06190 0.33 +0.8
1,441,977 - CA264_06190 0.34 -1.5
1,442,122 + CA264_06190 0.49 -0.4
1,442,148 - CA264_06190 0.52 +0.2
1,442,159 - CA264_06190 0.53 -0.2
1,442,339 - CA264_06190 0.72 -0.6
1,442,339 - CA264_06190 0.72 -0.4
1,442,342 - CA264_06190 0.72 +1.8
1,442,410 + CA264_06190 0.79 -0.5
1,442,410 + CA264_06190 0.79 -0.3
1,442,600 - +0.2
1,442,663 - +0.4
1,442,703 + -0.3
1,442,765 - -1.0
1,442,794 + CA264_06195 0.13 -0.2
1,442,914 + CA264_06195 0.79 +0.4
1,442,915 - CA264_06195 0.79 +0.6
1,442,923 + CA264_06195 0.84 +0.1
1,443,100 + -1.2
1,443,100 + +0.5
1,443,101 - +0.5
1,443,276 + -0.3
1,443,318 - -0.2
1,443,365 - -0.2
1,443,400 - +0.0
1,443,404 + -0.4
1,443,404 + -1.0
1,443,404 + -0.1
1,443,405 - -0.6
1,443,405 - +0.8
1,443,415 - -0.5
1,443,430 - +0.5
1,443,438 - +1.1
1,443,502 + -0.0
1,443,503 - +0.4
1,443,503 - +0.5
1,443,507 + +0.1

Or see this region's nucleotide sequence