Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_04150 and CA264_04155 are separated by 235 nucleotides CA264_04155 and CA264_04160 are separated by 6 nucleotides CA264_04160 and CA264_04165 are separated by 263 nucleotides
CA264_04150: CA264_04150 - hypothetical protein, at 959,698 to 959,985
_04150
CA264_04155: CA264_04155 - hypothetical protein, at 960,221 to 960,670
_04155
CA264_04160: CA264_04160 - hypothetical protein, at 960,677 to 960,901
_04160
CA264_04165: CA264_04165 - isoaspartyl peptidase/L-asparaginase, at 961,165 to 962,079
_04165
Position (kb) 960
961 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 959.683 kb on + strand at 959.688 kb on - strand at 959.804 kb on + strand, within CA264_04150 at 959.876 kb on + strand, within CA264_04150 at 959.877 kb on - strand, within CA264_04150 at 959.877 kb on - strand, within CA264_04150 at 960.047 kb on + strand at 960.047 kb on + strand at 960.078 kb on - strand at 960.081 kb on - strand at 960.125 kb on + strand at 960.125 kb on + strand at 960.126 kb on - strand at 960.193 kb on + strand at 960.217 kb on - strand at 960.217 kb on - strand at 960.266 kb on + strand, within CA264_04155 at 960.299 kb on + strand, within CA264_04155 at 960.339 kb on + strand, within CA264_04155 at 960.339 kb on + strand, within CA264_04155 at 960.394 kb on + strand, within CA264_04155 at 960.395 kb on - strand, within CA264_04155 at 960.439 kb on + strand, within CA264_04155 at 960.439 kb on + strand, within CA264_04155 at 960.440 kb on - strand, within CA264_04155 at 960.440 kb on - strand, within CA264_04155 at 960.471 kb on - strand, within CA264_04155 at 960.621 kb on - strand, within CA264_04155 at 960.685 kb on - strand at 960.691 kb on - strand at 960.724 kb on + strand, within CA264_04160 at 960.728 kb on + strand, within CA264_04160 at 960.728 kb on + strand, within CA264_04160 at 960.728 kb on + strand, within CA264_04160 at 960.729 kb on - strand, within CA264_04160 at 960.729 kb on - strand, within CA264_04160 at 960.872 kb on + strand, within CA264_04160 at 960.873 kb on - strand, within CA264_04160 at 960.873 kb on - strand, within CA264_04160 at 960.877 kb on - strand, within CA264_04160 at 960.877 kb on - strand, within CA264_04160 at 960.877 kb on - strand, within CA264_04160 at 960.911 kb on - strand at 960.912 kb on + strand at 960.913 kb on - strand at 960.918 kb on + strand at 960.918 kb on + strand at 960.928 kb on + strand at 960.928 kb on + strand at 961.040 kb on - strand at 961.166 kb on + strand at 961.167 kb on - strand at 961.170 kb on + strand at 961.171 kb on - strand at 961.221 kb on - strand at 961.283 kb on - strand, within CA264_04165 at 961.283 kb on - strand, within CA264_04165 at 961.380 kb on - strand, within CA264_04165 at 961.381 kb on + strand, within CA264_04165 at 961.445 kb on + strand, within CA264_04165 at 961.461 kb on - strand, within CA264_04165 at 961.504 kb on + strand, within CA264_04165 at 961.505 kb on - strand, within CA264_04165 at 961.611 kb on - strand, within CA264_04165 at 961.630 kb on - strand, within CA264_04165 at 961.716 kb on + strand, within CA264_04165 at 961.775 kb on + strand, within CA264_04165 at 961.776 kb on - strand, within CA264_04165 at 961.783 kb on - strand, within CA264_04165
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 959,683 + +0.1 959,688 - +0.1 959,804 + CA264_04150 0.37 -0.9 959,876 + CA264_04150 0.62 -0.5 959,877 - CA264_04150 0.62 -1.0 959,877 - CA264_04150 0.62 +0.3 960,047 + -0.2 960,047 + +0.2 960,078 - -0.1 960,081 - -0.3 960,125 + +0.5 960,125 + +1.4 960,126 - +1.1 960,193 + +0.9 960,217 - +3.0 960,217 - +0.1 960,266 + CA264_04155 0.10 +0.3 960,299 + CA264_04155 0.17 +0.1 960,339 + CA264_04155 0.26 -1.2 960,339 + CA264_04155 0.26 -0.2 960,394 + CA264_04155 0.38 +0.3 960,395 - CA264_04155 0.39 -0.0 960,439 + CA264_04155 0.48 -0.3 960,439 + CA264_04155 0.48 +0.8 960,440 - CA264_04155 0.49 +1.0 960,440 - CA264_04155 0.49 +0.2 960,471 - CA264_04155 0.56 +0.4 960,621 - CA264_04155 0.89 +0.2 960,685 - -0.2 960,691 - -0.3 960,724 + CA264_04160 0.21 +0.8 960,728 + CA264_04160 0.23 +0.8 960,728 + CA264_04160 0.23 -0.4 960,728 + CA264_04160 0.23 -0.5 960,729 - CA264_04160 0.23 +0.0 960,729 - CA264_04160 0.23 -0.1 960,872 + CA264_04160 0.87 +0.3 960,873 - CA264_04160 0.87 -0.2 960,873 - CA264_04160 0.87 -1.4 960,877 - CA264_04160 0.89 +0.1 960,877 - CA264_04160 0.89 +1.8 960,877 - CA264_04160 0.89 +0.0 960,911 - -0.6 960,912 + -0.2 960,913 - +0.0 960,918 + +0.6 960,918 + -0.1 960,928 + -1.1 960,928 + -1.0 961,040 - -0.2 961,166 + +1.2 961,167 - +0.8 961,170 + -0.0 961,171 - +0.6 961,221 - -0.2 961,283 - CA264_04165 0.13 +1.7 961,283 - CA264_04165 0.13 +0.8 961,380 - CA264_04165 0.23 +0.5 961,381 + CA264_04165 0.24 +0.3 961,445 + CA264_04165 0.31 -1.1 961,461 - CA264_04165 0.32 -1.8 961,504 + CA264_04165 0.37 +1.4 961,505 - CA264_04165 0.37 -0.8 961,611 - CA264_04165 0.49 -0.2 961,630 - CA264_04165 0.51 -0.5 961,716 + CA264_04165 0.60 +0.2 961,775 + CA264_04165 0.67 -0.1 961,776 - CA264_04165 0.67 +1.6 961,783 - CA264_04165 0.68 +0.3
Or see this region's nucleotide sequence