Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01625 and CA264_01630 are separated by 368 nucleotides CA264_01630 and CA264_01635 are separated by 335 nucleotides
CA264_01625: CA264_01625 - hypothetical protein, at 381,121 to 381,732
_01625
CA264_01630: CA264_01630 - TonB dependent receptor, at 382,101 to 384,557
_01630
CA264_01635: CA264_01635 - nicotinamidase, at 384,893 to 385,504
_01635
Position (kb) 382
383
384
385 Strain fitness (log2 ratio) -2
-1
0
1
2 at 381.124 kb on + strand at 381.145 kb on - strand at 381.212 kb on + strand, within CA264_01625 at 381.212 kb on + strand, within CA264_01625 at 381.217 kb on + strand, within CA264_01625 at 381.218 kb on - strand, within CA264_01625 at 381.287 kb on - strand, within CA264_01625 at 381.357 kb on - strand, within CA264_01625 at 381.357 kb on - strand, within CA264_01625 at 381.378 kb on - strand, within CA264_01625 at 381.434 kb on + strand, within CA264_01625 at 381.434 kb on + strand, within CA264_01625 at 381.434 kb on + strand, within CA264_01625 at 381.434 kb on + strand, within CA264_01625 at 381.435 kb on - strand, within CA264_01625 at 381.435 kb on - strand, within CA264_01625 at 381.438 kb on + strand, within CA264_01625 at 381.439 kb on - strand, within CA264_01625 at 381.440 kb on + strand, within CA264_01625 at 381.440 kb on + strand, within CA264_01625 at 381.440 kb on + strand, within CA264_01625 at 381.440 kb on + strand, within CA264_01625 at 381.441 kb on - strand, within CA264_01625 at 381.441 kb on - strand, within CA264_01625 at 381.441 kb on - strand, within CA264_01625 at 381.441 kb on - strand, within CA264_01625 at 381.461 kb on + strand, within CA264_01625 at 381.462 kb on - strand, within CA264_01625 at 381.462 kb on - strand, within CA264_01625 at 381.524 kb on - strand, within CA264_01625 at 381.616 kb on + strand, within CA264_01625 at 381.616 kb on + strand, within CA264_01625 at 381.617 kb on - strand, within CA264_01625 at 381.739 kb on + strand at 381.739 kb on + strand at 381.739 kb on + strand at 381.740 kb on - strand at 381.740 kb on - strand at 381.749 kb on + strand at 381.754 kb on + strand at 381.755 kb on - strand at 381.767 kb on - strand at 381.790 kb on - strand at 381.814 kb on + strand at 381.935 kb on + strand at 381.935 kb on + strand at 381.935 kb on + strand at 381.936 kb on - strand at 381.936 kb on - strand at 381.963 kb on - strand at 381.965 kb on + strand at 381.965 kb on + strand at 382.017 kb on + strand at 382.017 kb on + strand at 382.020 kb on + strand at 382.021 kb on - strand at 382.041 kb on + strand at 382.041 kb on + strand at 382.042 kb on - strand at 382.044 kb on - strand at 382.075 kb on + strand at 382.083 kb on + strand at 382.096 kb on - strand at 382.175 kb on + strand at 382.204 kb on + strand at 382.204 kb on + strand at 382.204 kb on + strand at 382.285 kb on + strand at 382.286 kb on - strand at 382.286 kb on - strand at 382.295 kb on + strand at 382.296 kb on - strand at 382.297 kb on + strand at 382.297 kb on + strand at 382.298 kb on - strand at 382.426 kb on + strand, within CA264_01630 at 382.441 kb on - strand, within CA264_01630 at 382.486 kb on + strand, within CA264_01630 at 382.487 kb on - strand, within CA264_01630 at 382.487 kb on - strand, within CA264_01630 at 382.490 kb on + strand, within CA264_01630 at 382.491 kb on - strand, within CA264_01630 at 382.492 kb on + strand, within CA264_01630 at 382.492 kb on + strand, within CA264_01630 at 382.493 kb on - strand, within CA264_01630 at 382.542 kb on + strand, within CA264_01630 at 382.543 kb on - strand, within CA264_01630 at 382.543 kb on - strand, within CA264_01630 at 382.543 kb on - strand, within CA264_01630 at 382.757 kb on + strand, within CA264_01630 at 382.820 kb on - strand, within CA264_01630 at 382.849 kb on - strand, within CA264_01630 at 382.852 kb on + strand, within CA264_01630 at 382.853 kb on - strand, within CA264_01630 at 382.865 kb on - strand, within CA264_01630 at 382.897 kb on + strand, within CA264_01630 at 382.920 kb on - strand, within CA264_01630 at 383.059 kb on + strand, within CA264_01630 at 383.078 kb on + strand, within CA264_01630 at 383.078 kb on + strand, within CA264_01630 at 383.078 kb on + strand, within CA264_01630 at 383.079 kb on - strand, within CA264_01630 at 383.161 kb on + strand, within CA264_01630 at 383.161 kb on + strand, within CA264_01630 at 383.161 kb on + strand, within CA264_01630 at 383.162 kb on - strand, within CA264_01630 at 383.171 kb on - strand, within CA264_01630 at 383.171 kb on - strand, within CA264_01630 at 383.171 kb on - strand, within CA264_01630 at 383.173 kb on + strand, within CA264_01630 at 383.177 kb on - strand, within CA264_01630 at 383.215 kb on - strand, within CA264_01630 at 383.244 kb on + strand, within CA264_01630 at 383.244 kb on + strand, within CA264_01630 at 383.244 kb on + strand, within CA264_01630 at 383.244 kb on + strand, within CA264_01630 at 383.248 kb on + strand, within CA264_01630 at 383.249 kb on - strand, within CA264_01630 at 383.317 kb on + strand, within CA264_01630 at 383.322 kb on - strand, within CA264_01630 at 383.334 kb on - strand, within CA264_01630 at 383.414 kb on + strand, within CA264_01630 at 383.447 kb on - strand, within CA264_01630 at 383.447 kb on - strand, within CA264_01630 at 383.711 kb on + strand, within CA264_01630 at 383.711 kb on + strand, within CA264_01630 at 383.711 kb on + strand, within CA264_01630 at 383.712 kb on - strand, within CA264_01630 at 383.714 kb on - strand, within CA264_01630 at 383.714 kb on - strand, within CA264_01630 at 383.781 kb on + strand, within CA264_01630 at 383.827 kb on + strand, within CA264_01630 at 383.827 kb on + strand, within CA264_01630 at 383.828 kb on - strand, within CA264_01630 at 383.871 kb on + strand, within CA264_01630 at 383.872 kb on - strand, within CA264_01630 at 383.872 kb on - strand, within CA264_01630 at 383.872 kb on - strand, within CA264_01630 at 383.880 kb on - strand, within CA264_01630 at 383.905 kb on + strand, within CA264_01630 at 383.942 kb on + strand, within CA264_01630 at 384.022 kb on - strand, within CA264_01630 at 384.026 kb on + strand, within CA264_01630 at 384.026 kb on + strand, within CA264_01630 at 384.026 kb on + strand, within CA264_01630 at 384.027 kb on - strand, within CA264_01630 at 384.145 kb on + strand, within CA264_01630 at 384.234 kb on + strand, within CA264_01630 at 384.234 kb on + strand, within CA264_01630 at 384.234 kb on + strand, within CA264_01630 at 384.235 kb on - strand, within CA264_01630 at 384.235 kb on - strand, within CA264_01630 at 384.235 kb on - strand, within CA264_01630 at 384.235 kb on - strand, within CA264_01630 at 384.235 kb on - strand, within CA264_01630 at 384.235 kb on - strand, within CA264_01630 at 384.301 kb on + strand, within CA264_01630 at 384.302 kb on - strand, within CA264_01630 at 384.310 kb on + strand, within CA264_01630 at 384.311 kb on - strand, within CA264_01630 at 384.314 kb on + strand at 384.327 kb on - strand at 384.328 kb on + strand at 384.329 kb on - strand at 384.356 kb on + strand at 384.357 kb on - strand at 384.420 kb on + strand at 384.421 kb on - strand at 384.433 kb on + strand at 384.434 kb on - strand at 384.434 kb on - strand at 384.434 kb on - strand at 384.520 kb on - strand at 384.561 kb on + strand at 384.561 kb on + strand at 384.562 kb on - strand at 384.562 kb on - strand at 384.562 kb on - strand at 384.563 kb on + strand at 384.563 kb on + strand at 384.563 kb on + strand at 384.563 kb on + strand at 384.564 kb on - strand at 384.631 kb on - strand at 384.645 kb on - strand at 384.696 kb on - strand at 384.714 kb on + strand at 384.714 kb on + strand at 384.784 kb on + strand at 384.796 kb on + strand at 384.815 kb on - strand at 384.872 kb on - strand at 384.872 kb on - strand at 384.873 kb on + strand at 384.873 kb on + strand at 384.874 kb on - strand at 384.907 kb on + strand at 384.942 kb on - strand at 385.000 kb on + strand, within CA264_01635 at 385.000 kb on + strand, within CA264_01635 at 385.000 kb on + strand, within CA264_01635 at 385.006 kb on - strand, within CA264_01635 at 385.006 kb on - strand, within CA264_01635 at 385.056 kb on + strand, within CA264_01635 at 385.099 kb on + strand, within CA264_01635 at 385.100 kb on - strand, within CA264_01635 at 385.161 kb on + strand, within CA264_01635 at 385.161 kb on + strand, within CA264_01635 at 385.162 kb on - strand, within CA264_01635 at 385.170 kb on - strand, within CA264_01635 at 385.301 kb on + strand, within CA264_01635 at 385.302 kb on - strand, within CA264_01635 at 385.478 kb on + strand at 385.479 kb on - strand at 385.479 kb on - strand at 385.479 kb on - strand at 385.479 kb on - strand at 385.479 kb on - strand at 385.479 kb on - strand at 385.484 kb on + strand at 385.487 kb on + strand at 385.493 kb on + strand at 385.504 kb on + strand at 385.504 kb on + strand at 385.504 kb on + strand at 385.504 kb on + strand at 385.505 kb on - strand at 385.505 kb on - strand at 385.505 kb on - strand at 385.508 kb on - strand at 385.508 kb on - strand at 385.514 kb on + strand at 385.517 kb on + strand at 385.517 kb on + strand at 385.518 kb on - strand at 385.518 kb on - strand at 385.518 kb on - strand at 385.524 kb on - strand at 385.543 kb on + strand at 385.543 kb on + strand at 385.543 kb on + strand at 385.545 kb on + strand at 385.545 kb on + strand at 385.546 kb on - strand at 385.546 kb on - strand at 385.546 kb on - strand at 385.546 kb on - strand at 385.546 kb on - strand at 385.547 kb on + strand at 385.548 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 381,124 + +0.7 381,145 - -0.1 381,212 + CA264_01625 0.15 +0.2 381,212 + CA264_01625 0.15 -0.7 381,217 + CA264_01625 0.16 -1.2 381,218 - CA264_01625 0.16 -0.3 381,287 - CA264_01625 0.27 -0.3 381,357 - CA264_01625 0.39 -0.2 381,357 - CA264_01625 0.39 +0.6 381,378 - CA264_01625 0.42 +1.7 381,434 + CA264_01625 0.51 -0.2 381,434 + CA264_01625 0.51 +0.1 381,434 + CA264_01625 0.51 -0.1 381,434 + CA264_01625 0.51 +1.0 381,435 - CA264_01625 0.51 +0.5 381,435 - CA264_01625 0.51 +0.0 381,438 + CA264_01625 0.52 +2.3 381,439 - CA264_01625 0.52 -0.1 381,440 + CA264_01625 0.52 -1.8 381,440 + CA264_01625 0.52 -0.0 381,440 + CA264_01625 0.52 +0.7 381,440 + CA264_01625 0.52 +0.2 381,441 - CA264_01625 0.52 -0.8 381,441 - CA264_01625 0.52 -0.9 381,441 - CA264_01625 0.52 +0.7 381,441 - CA264_01625 0.52 -0.1 381,461 + CA264_01625 0.56 -0.3 381,462 - CA264_01625 0.56 -0.5 381,462 - CA264_01625 0.56 -0.3 381,524 - CA264_01625 0.66 -0.7 381,616 + CA264_01625 0.81 -0.9 381,616 + CA264_01625 0.81 +0.3 381,617 - CA264_01625 0.81 -1.3 381,739 + -0.1 381,739 + +2.3 381,739 + -1.3 381,740 - -0.3 381,740 - +0.0 381,749 + -0.1 381,754 + -0.5 381,755 - -2.4 381,767 - +1.1 381,790 - -0.4 381,814 + -0.2 381,935 + -0.3 381,935 + -0.2 381,935 + +0.0 381,936 - +1.3 381,936 - -1.5 381,963 - -0.3 381,965 + +0.1 381,965 + +0.8 382,017 + +0.3 382,017 + -0.3 382,020 + -0.5 382,021 - +0.2 382,041 + +2.3 382,041 + +0.0 382,042 - -0.4 382,044 - -1.7 382,075 + +0.2 382,083 + -1.7 382,096 - +0.6 382,175 + -0.3 382,204 + +1.4 382,204 + -1.1 382,204 + -1.4 382,285 + +0.7 382,286 - +0.1 382,286 - -0.1 382,295 + +0.2 382,296 - -0.8 382,297 + -0.8 382,297 + +0.8 382,298 - -0.1 382,426 + CA264_01630 0.13 +0.2 382,441 - CA264_01630 0.14 +0.6 382,486 + CA264_01630 0.16 -0.5 382,487 - CA264_01630 0.16 +1.4 382,487 - CA264_01630 0.16 -0.1 382,490 + CA264_01630 0.16 -1.1 382,491 - CA264_01630 0.16 +0.1 382,492 + CA264_01630 0.16 -0.8 382,492 + CA264_01630 0.16 -0.1 382,493 - CA264_01630 0.16 +0.3 382,542 + CA264_01630 0.18 -0.7 382,543 - CA264_01630 0.18 +0.2 382,543 - CA264_01630 0.18 +0.7 382,543 - CA264_01630 0.18 +0.7 382,757 + CA264_01630 0.27 +0.0 382,820 - CA264_01630 0.29 -0.0 382,849 - CA264_01630 0.30 +0.2 382,852 + CA264_01630 0.31 +1.2 382,853 - CA264_01630 0.31 +0.3 382,865 - CA264_01630 0.31 -0.2 382,897 + CA264_01630 0.32 +0.1 382,920 - CA264_01630 0.33 -0.4 383,059 + CA264_01630 0.39 +0.2 383,078 + CA264_01630 0.40 -1.1 383,078 + CA264_01630 0.40 -1.6 383,078 + CA264_01630 0.40 -2.6 383,079 - CA264_01630 0.40 +0.5 383,161 + CA264_01630 0.43 +0.0 383,161 + CA264_01630 0.43 +0.7 383,161 + CA264_01630 0.43 +0.3 383,162 - CA264_01630 0.43 +0.7 383,171 - CA264_01630 0.44 +1.3 383,171 - CA264_01630 0.44 -0.7 383,171 - CA264_01630 0.44 -0.2 383,173 + CA264_01630 0.44 +0.4 383,177 - CA264_01630 0.44 +0.9 383,215 - CA264_01630 0.45 -0.3 383,244 + CA264_01630 0.47 +1.7 383,244 + CA264_01630 0.47 -0.1 383,244 + CA264_01630 0.47 -0.3 383,244 + CA264_01630 0.47 +0.1 383,248 + CA264_01630 0.47 +0.2 383,249 - CA264_01630 0.47 -1.1 383,317 + CA264_01630 0.49 +1.2 383,322 - CA264_01630 0.50 +0.1 383,334 - CA264_01630 0.50 +0.2 383,414 + CA264_01630 0.53 -0.2 383,447 - CA264_01630 0.55 +0.9 383,447 - CA264_01630 0.55 -0.3 383,711 + CA264_01630 0.66 -0.6 383,711 + CA264_01630 0.66 +0.2 383,711 + CA264_01630 0.66 +0.3 383,712 - CA264_01630 0.66 -0.1 383,714 - CA264_01630 0.66 +1.5 383,714 - CA264_01630 0.66 -2.1 383,781 + CA264_01630 0.68 +0.3 383,827 + CA264_01630 0.70 +0.1 383,827 + CA264_01630 0.70 +0.2 383,828 - CA264_01630 0.70 -0.7 383,871 + CA264_01630 0.72 -0.8 383,872 - CA264_01630 0.72 -0.3 383,872 - CA264_01630 0.72 -1.0 383,872 - CA264_01630 0.72 +2.7 383,880 - CA264_01630 0.72 -1.4 383,905 + CA264_01630 0.73 -0.1 383,942 + CA264_01630 0.75 +0.2 384,022 - CA264_01630 0.78 -0.8 384,026 + CA264_01630 0.78 -0.8 384,026 + CA264_01630 0.78 +0.2 384,026 + CA264_01630 0.78 -2.1 384,027 - CA264_01630 0.78 -0.7 384,145 + CA264_01630 0.83 +0.6 384,234 + CA264_01630 0.87 +0.3 384,234 + CA264_01630 0.87 +1.0 384,234 + CA264_01630 0.87 -0.9 384,235 - CA264_01630 0.87 +0.7 384,235 - CA264_01630 0.87 -0.8 384,235 - CA264_01630 0.87 +1.3 384,235 - CA264_01630 0.87 +0.7 384,235 - CA264_01630 0.87 -0.4 384,235 - CA264_01630 0.87 -0.1 384,301 + CA264_01630 0.90 +0.3 384,302 - CA264_01630 0.90 -0.3 384,310 + CA264_01630 0.90 -0.3 384,311 - CA264_01630 0.90 -0.6 384,314 + +0.7 384,327 - +0.7 384,328 + -0.3 384,329 - +1.0 384,356 + -0.9 384,357 - -1.2 384,420 + +0.3 384,421 - -0.8 384,433 + +0.3 384,434 - +0.5 384,434 - -0.5 384,434 - -0.4 384,520 - -2.3 384,561 + +1.1 384,561 + +0.6 384,562 - +0.4 384,562 - +0.2 384,562 - +0.2 384,563 + +1.1 384,563 + -1.0 384,563 + +1.2 384,563 + +0.5 384,564 - +0.6 384,631 - -0.5 384,645 - -1.3 384,696 - +0.7 384,714 + +0.1 384,714 + -1.1 384,784 + -1.3 384,796 + +0.1 384,815 - -0.1 384,872 - +0.4 384,872 - -0.8 384,873 + -1.1 384,873 + +0.2 384,874 - -0.1 384,907 + +0.0 384,942 - +0.0 385,000 + CA264_01635 0.17 -0.3 385,000 + CA264_01635 0.17 -0.3 385,000 + CA264_01635 0.17 +0.2 385,006 - CA264_01635 0.18 -0.5 385,006 - CA264_01635 0.18 +0.3 385,056 + CA264_01635 0.27 +0.6 385,099 + CA264_01635 0.34 +0.2 385,100 - CA264_01635 0.34 -0.4 385,161 + CA264_01635 0.44 -1.2 385,161 + CA264_01635 0.44 +0.5 385,162 - CA264_01635 0.44 -0.6 385,170 - CA264_01635 0.45 -0.6 385,301 + CA264_01635 0.67 +0.6 385,302 - CA264_01635 0.67 -0.3 385,478 + -1.2 385,479 - -1.4 385,479 - -0.2 385,479 - +0.1 385,479 - +0.6 385,479 - +1.6 385,479 - +0.1 385,484 + +0.2 385,487 + -0.2 385,493 + -0.6 385,504 + -1.6 385,504 + -0.7 385,504 + -0.6 385,504 + -0.0 385,505 - -0.4 385,505 - -0.3 385,505 - -1.0 385,508 - +0.4 385,508 - +0.7 385,514 + -0.2 385,517 + +1.0 385,517 + +0.7 385,518 - +0.4 385,518 - +0.5 385,518 - +0.4 385,524 - -0.3 385,543 + +1.2 385,543 + +1.0 385,543 + +0.2 385,545 + -0.5 385,545 + -1.1 385,546 - -0.0 385,546 - +0.5 385,546 - +0.6 385,546 - +0.6 385,546 - -0.4 385,547 + +1.4 385,548 - +1.3
Or see this region's nucleotide sequence