Experiment: m.b. Tetracycline 0.006 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00870 and CA264_00875 are separated by 20 nucleotides CA264_00875 and CA264_00880 are separated by 258 nucleotides CA264_00880 and CA264_00885 are separated by 373 nucleotides
CA264_00870: CA264_00870 - DNA translocase FtsK, at 185,314 to 187,944
_00870
CA264_00875: CA264_00875 - cell envelope biogenesis protein LolA, at 187,965 to 188,609
_00875
CA264_00880: CA264_00880 - orotidine 5'-phosphate decarboxylase, at 188,868 to 189,695
_00880
CA264_00885: CA264_00885 - hypothetical protein, at 190,069 to 190,440
_00885
Position (kb) 188
189
190 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 187.950 kb on + strand at 187.951 kb on - strand at 187.951 kb on - strand at 187.953 kb on + strand at 187.953 kb on + strand at 187.954 kb on - strand at 187.984 kb on + strand at 188.073 kb on + strand, within CA264_00875 at 188.178 kb on - strand, within CA264_00875 at 188.232 kb on + strand, within CA264_00875 at 188.232 kb on + strand, within CA264_00875 at 188.232 kb on + strand, within CA264_00875 at 188.322 kb on + strand, within CA264_00875 at 188.322 kb on + strand, within CA264_00875 at 188.324 kb on + strand, within CA264_00875 at 188.335 kb on - strand, within CA264_00875 at 188.336 kb on + strand, within CA264_00875 at 188.336 kb on + strand, within CA264_00875 at 188.336 kb on + strand, within CA264_00875 at 188.336 kb on + strand, within CA264_00875 at 188.336 kb on + strand, within CA264_00875 at 188.336 kb on + strand, within CA264_00875 at 188.337 kb on - strand, within CA264_00875 at 188.346 kb on + strand, within CA264_00875 at 188.390 kb on - strand, within CA264_00875 at 188.431 kb on + strand, within CA264_00875 at 188.439 kb on + strand, within CA264_00875 at 188.440 kb on - strand, within CA264_00875 at 188.504 kb on + strand, within CA264_00875 at 188.505 kb on - strand, within CA264_00875 at 188.509 kb on - strand, within CA264_00875 at 188.510 kb on + strand, within CA264_00875 at 188.559 kb on - strand at 188.578 kb on - strand at 188.578 kb on - strand at 188.579 kb on + strand at 188.603 kb on - strand at 188.608 kb on - strand at 188.622 kb on + strand at 188.623 kb on - strand at 188.627 kb on + strand at 188.665 kb on + strand at 188.669 kb on + strand at 188.757 kb on + strand at 188.757 kb on + strand at 188.758 kb on - strand at 188.758 kb on - strand at 188.780 kb on + strand at 188.780 kb on + strand at 188.843 kb on + strand at 188.844 kb on - strand at 188.914 kb on - strand at 189.036 kb on + strand, within CA264_00880 at 189.036 kb on + strand, within CA264_00880 at 189.037 kb on - strand, within CA264_00880 at 189.057 kb on + strand, within CA264_00880 at 189.058 kb on - strand, within CA264_00880 at 189.232 kb on - strand, within CA264_00880 at 189.361 kb on - strand, within CA264_00880 at 189.421 kb on - strand, within CA264_00880 at 189.448 kb on - strand, within CA264_00880 at 189.594 kb on + strand, within CA264_00880 at 189.594 kb on + strand, within CA264_00880 at 189.595 kb on - strand, within CA264_00880 at 189.699 kb on + strand at 189.699 kb on + strand at 189.699 kb on + strand at 189.699 kb on + strand at 189.700 kb on - strand at 189.714 kb on - strand at 189.773 kb on + strand at 189.774 kb on - strand at 189.774 kb on - strand at 189.779 kb on + strand at 189.779 kb on + strand at 189.779 kb on + strand at 189.782 kb on + strand at 189.783 kb on - strand at 189.792 kb on - strand at 189.798 kb on + strand at 189.798 kb on + strand at 189.911 kb on + strand at 189.912 kb on - strand at 189.921 kb on + strand at 189.982 kb on + strand at 189.982 kb on + strand at 189.983 kb on - strand at 189.983 kb on - strand at 189.989 kb on + strand at 190.047 kb on + strand at 190.047 kb on + strand at 190.048 kb on - strand at 190.048 kb on - strand at 190.048 kb on - strand at 190.052 kb on - strand at 190.063 kb on + strand at 190.097 kb on + strand at 190.098 kb on - strand at 190.099 kb on + strand at 190.100 kb on - strand at 190.102 kb on - strand at 190.122 kb on + strand, within CA264_00885 at 190.123 kb on - strand, within CA264_00885 at 190.137 kb on - strand, within CA264_00885 at 190.152 kb on - strand, within CA264_00885 at 190.157 kb on + strand, within CA264_00885 at 190.158 kb on - strand, within CA264_00885 at 190.194 kb on + strand, within CA264_00885 at 190.197 kb on + strand, within CA264_00885 at 190.250 kb on - strand, within CA264_00885 at 190.251 kb on + strand, within CA264_00885 at 190.324 kb on + strand, within CA264_00885 at 190.326 kb on + strand, within CA264_00885 at 190.338 kb on + strand, within CA264_00885 at 190.338 kb on + strand, within CA264_00885 at 190.346 kb on + strand, within CA264_00885 at 190.347 kb on - strand, within CA264_00885 at 190.347 kb on - strand, within CA264_00885 at 190.357 kb on + strand, within CA264_00885 at 190.364 kb on - strand, within CA264_00885 at 190.369 kb on - strand, within CA264_00885 at 190.380 kb on - strand, within CA264_00885 at 190.384 kb on - strand, within CA264_00885 at 190.410 kb on - strand at 190.416 kb on - strand at 190.416 kb on - strand at 190.416 kb on - strand at 190.421 kb on + strand at 190.492 kb on + strand at 190.503 kb on - strand at 190.551 kb on + strand at 190.551 kb on + strand at 190.556 kb on + strand at 190.556 kb on + strand at 190.557 kb on - strand at 190.576 kb on + strand at 190.612 kb on + strand at 190.612 kb on + strand at 190.631 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.006 mg/ml remove 187,950 + +0.4 187,951 - -0.5 187,951 - -0.8 187,953 + +0.2 187,953 + -0.6 187,954 - +0.5 187,984 + +1.2 188,073 + CA264_00875 0.17 -1.3 188,178 - CA264_00875 0.33 -1.7 188,232 + CA264_00875 0.41 -1.6 188,232 + CA264_00875 0.41 -0.2 188,232 + CA264_00875 0.41 -1.6 188,322 + CA264_00875 0.55 -1.9 188,322 + CA264_00875 0.55 +0.2 188,324 + CA264_00875 0.56 +0.8 188,335 - CA264_00875 0.57 -0.7 188,336 + CA264_00875 0.58 -1.0 188,336 + CA264_00875 0.58 -2.7 188,336 + CA264_00875 0.58 +2.3 188,336 + CA264_00875 0.58 -0.8 188,336 + CA264_00875 0.58 -1.6 188,336 + CA264_00875 0.58 -1.2 188,337 - CA264_00875 0.58 -0.2 188,346 + CA264_00875 0.59 -1.9 188,390 - CA264_00875 0.66 -0.2 188,431 + CA264_00875 0.72 -2.5 188,439 + CA264_00875 0.73 -2.0 188,440 - CA264_00875 0.74 -1.6 188,504 + CA264_00875 0.84 -2.8 188,505 - CA264_00875 0.84 +0.2 188,509 - CA264_00875 0.84 -1.7 188,510 + CA264_00875 0.84 -0.8 188,559 - -0.1 188,578 - -0.5 188,578 - -1.2 188,579 + -1.2 188,603 - +1.3 188,608 - +0.5 188,622 + +0.0 188,623 - +0.2 188,627 + -0.2 188,665 + -0.2 188,669 + +0.6 188,757 + -0.6 188,757 + +0.1 188,758 - +0.4 188,758 - +1.1 188,780 + -0.0 188,780 + +0.7 188,843 + +1.1 188,844 - +0.3 188,914 - +0.2 189,036 + CA264_00880 0.20 -1.5 189,036 + CA264_00880 0.20 -0.3 189,037 - CA264_00880 0.20 -0.2 189,057 + CA264_00880 0.23 +0.6 189,058 - CA264_00880 0.23 -0.0 189,232 - CA264_00880 0.44 -0.3 189,361 - CA264_00880 0.60 -0.8 189,421 - CA264_00880 0.67 +0.6 189,448 - CA264_00880 0.70 -0.4 189,594 + CA264_00880 0.88 -0.5 189,594 + CA264_00880 0.88 -3.5 189,595 - CA264_00880 0.88 -0.2 189,699 + +0.2 189,699 + +1.3 189,699 + -0.1 189,699 + +0.2 189,700 - -1.3 189,714 - -0.1 189,773 + +2.3 189,774 - -2.2 189,774 - +0.0 189,779 + -0.7 189,779 + -0.6 189,779 + +1.1 189,782 + -0.4 189,783 - -1.2 189,792 - +0.3 189,798 + +0.5 189,798 + +0.8 189,911 + +0.9 189,912 - +0.0 189,921 + +0.1 189,982 + -0.6 189,982 + -0.4 189,983 - -0.3 189,983 - +0.1 189,989 + -0.2 190,047 + -2.0 190,047 + -0.0 190,048 - +0.5 190,048 - +0.1 190,048 - +0.2 190,052 - -0.6 190,063 + -0.6 190,097 + +0.2 190,098 - -0.3 190,099 + -0.6 190,100 - +0.3 190,102 - +0.1 190,122 + CA264_00885 0.14 +1.4 190,123 - CA264_00885 0.15 -0.7 190,137 - CA264_00885 0.18 -0.2 190,152 - CA264_00885 0.22 +0.2 190,157 + CA264_00885 0.24 -0.2 190,158 - CA264_00885 0.24 -0.2 190,194 + CA264_00885 0.34 +0.0 190,197 + CA264_00885 0.34 -0.0 190,250 - CA264_00885 0.49 -0.2 190,251 + CA264_00885 0.49 +0.5 190,324 + CA264_00885 0.69 -0.9 190,326 + CA264_00885 0.69 -0.0 190,338 + CA264_00885 0.72 -0.0 190,338 + CA264_00885 0.72 +2.3 190,346 + CA264_00885 0.74 +0.8 190,347 - CA264_00885 0.75 -0.4 190,347 - CA264_00885 0.75 +1.3 190,357 + CA264_00885 0.77 -0.4 190,364 - CA264_00885 0.79 -0.5 190,369 - CA264_00885 0.81 -0.6 190,380 - CA264_00885 0.84 +0.6 190,384 - CA264_00885 0.85 -1.2 190,410 - +0.3 190,416 - +0.5 190,416 - -0.6 190,416 - -0.2 190,421 + -0.1 190,492 + -0.0 190,503 - +2.3 190,551 + -1.1 190,551 + +0.4 190,556 + -0.7 190,556 + -0.2 190,557 - -0.4 190,576 + -0.4 190,612 + -0.8 190,612 + +0.1 190,631 + -0.8
Or see this region's nucleotide sequence