Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu1060 and Atu1061 are separated by 146 nucleotides Atu1061 and Atu1062 are separated by 394 nucleotides Atu1062 and Atu1063 are separated by 23 nucleotides Atu1063 and Atu1064 are separated by 175 nucleotides
Atu1060: Atu1060 - two component response regulator, at 1,050,234 to 1,051,526
Atu1060
Atu1061: Atu1061 - hypothetical protein, at 1,051,673 to 1,051,822
Atu1061
Atu1062: Atu1062 - phosphatidylserine synthase, at 1,052,217 to 1,053,083
Atu1062
Atu1063: Atu1063 - phosphatidylserine decarboxylase, at 1,053,107 to 1,053,805
Atu1063
Atu1064: Atu1064 - ABC transporter, nucleotide binding/ATPase protein, at 1,053,981 to 1,055,867
Atu1064
Position (kb)
1052
1053
1054 Strain fitness (log2 ratio)
-1
0
1
2 at 1051.359 kb on + strand, within Atu1060 at 1051.410 kb on + strand at 1051.411 kb on + strand at 1051.476 kb on - strand at 1051.487 kb on + strand at 1051.541 kb on + strand at 1051.579 kb on - strand at 1051.643 kb on + strand at 1051.688 kb on + strand, within Atu1061 at 1051.952 kb on + strand at 1052.083 kb on - strand at 1052.106 kb on + strand at 1052.282 kb on + strand at 1052.287 kb on + strand at 1052.307 kb on - strand, within Atu1062 at 1054.077 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 1,051,359 + Atu1060 0.87 +0.1 1,051,410 + -0.0 1,051,411 + -0.4 1,051,476 - -0.5 1,051,487 + +0.1 1,051,541 + +0.3 1,051,579 - +2.6 1,051,643 + +0.2 1,051,688 + Atu1061 0.10 -1.7 1,051,952 + -0.2 1,052,083 - -0.1 1,052,106 + +0.7 1,052,282 + -1.7 1,052,287 + -1.4 1,052,307 - Atu1062 0.10 -1.6 1,054,077 + +0.8
Or see this region's nucleotide sequence