Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0646 and Atu8084 are separated by 324 nucleotides Atu8084 and Atu0647 are separated by 155 nucleotides Atu0647 and Atu0648 are separated by 201 nucleotides
Atu0646: Atu0646 - methyl-accepting chemotaxis protein A, at 634,672 to 636,495
Atu0646
Atu8084: Atu8084 - hypothetical protein, at 636,820 to 637,329
Atu8084
Atu0647: Atu0647 - phosphoribosylamine--glycine ligase, at 637,485 to 638,756
Atu0647
Atu0648: Atu0648 - hypothetical protein, at 638,958 to 641,282
Atu0648
Position (kb) 637
638
639 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 636.532 kb on - strand at 636.560 kb on + strand at 636.560 kb on + strand at 636.568 kb on - strand at 636.596 kb on - strand at 636.835 kb on + strand at 636.979 kb on - strand, within Atu8084 at 637.002 kb on - strand, within Atu8084 at 637.013 kb on + strand, within Atu8084 at 637.013 kb on - strand, within Atu8084 at 637.161 kb on + strand, within Atu8084 at 637.163 kb on + strand, within Atu8084 at 637.163 kb on + strand, within Atu8084 at 637.163 kb on + strand, within Atu8084 at 637.163 kb on + strand, within Atu8084 at 637.163 kb on + strand, within Atu8084 at 637.171 kb on - strand, within Atu8084 at 637.171 kb on - strand, within Atu8084 at 637.171 kb on - strand, within Atu8084 at 637.171 kb on - strand, within Atu8084 at 637.176 kb on - strand, within Atu8084 at 637.176 kb on - strand, within Atu8084 at 637.291 kb on + strand at 637.470 kb on + strand at 637.565 kb on + strand at 637.565 kb on + strand at 637.661 kb on - strand, within Atu0647 at 637.664 kb on - strand, within Atu0647 at 637.831 kb on + strand, within Atu0647 at 638.216 kb on + strand, within Atu0647 at 638.216 kb on + strand, within Atu0647 at 638.221 kb on + strand, within Atu0647 at 638.366 kb on - strand, within Atu0647 at 638.384 kb on + strand, within Atu0647 at 638.415 kb on + strand, within Atu0647 at 638.483 kb on + strand, within Atu0647 at 638.527 kb on + strand, within Atu0647 at 638.615 kb on - strand, within Atu0647 at 638.627 kb on + strand, within Atu0647 at 638.633 kb on + strand at 638.758 kb on + strand at 638.758 kb on + strand at 638.870 kb on - strand at 638.901 kb on - strand at 638.941 kb on + strand at 638.946 kb on + strand at 638.954 kb on - strand at 638.962 kb on - strand at 638.988 kb on + strand at 638.988 kb on + strand at 638.995 kb on - strand at 639.023 kb on + strand at 639.023 kb on + strand at 639.031 kb on - strand at 639.031 kb on - strand at 639.041 kb on - strand at 639.060 kb on + strand at 639.060 kb on + strand at 639.068 kb on - strand at 639.109 kb on + strand at 639.111 kb on - strand at 639.248 kb on + strand, within Atu0648 at 639.254 kb on + strand, within Atu0648 at 639.403 kb on + strand, within Atu0648 at 639.431 kb on + strand, within Atu0648 at 639.456 kb on + strand, within Atu0648 at 639.589 kb on + strand, within Atu0648
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 636,532 - -0.3 636,560 + -0.5 636,560 + +0.3 636,568 - -0.1 636,596 - +0.2 636,835 + +0.2 636,979 - Atu8084 0.31 -1.2 637,002 - Atu8084 0.36 +0.4 637,013 + Atu8084 0.38 -0.0 637,013 - Atu8084 0.38 +0.8 637,161 + Atu8084 0.67 -0.2 637,163 + Atu8084 0.67 -0.1 637,163 + Atu8084 0.67 +0.6 637,163 + Atu8084 0.67 -0.2 637,163 + Atu8084 0.67 +1.0 637,163 + Atu8084 0.67 -0.9 637,171 - Atu8084 0.69 -1.1 637,171 - Atu8084 0.69 +0.3 637,171 - Atu8084 0.69 +0.9 637,171 - Atu8084 0.69 +0.6 637,176 - Atu8084 0.70 -0.5 637,176 - Atu8084 0.70 -0.2 637,291 + -0.3 637,470 + +0.8 637,565 + -3.6 637,565 + +1.8 637,661 - Atu0647 0.14 -6.3 637,664 - Atu0647 0.14 -2.9 637,831 + Atu0647 0.27 -0.8 638,216 + Atu0647 0.57 -0.2 638,216 + Atu0647 0.57 -2.8 638,221 + Atu0647 0.58 -2.4 638,366 - Atu0647 0.69 -0.8 638,384 + Atu0647 0.71 -4.2 638,415 + Atu0647 0.73 -2.4 638,483 + Atu0647 0.78 -0.5 638,527 + Atu0647 0.82 -3.0 638,615 - Atu0647 0.89 -5.1 638,627 + Atu0647 0.90 -1.5 638,633 + -3.3 638,758 + -1.9 638,758 + -1.7 638,870 - -0.2 638,901 - -0.1 638,941 + -1.1 638,946 + -1.5 638,954 - -0.8 638,962 - -1.1 638,988 + +0.5 638,988 + +0.4 638,995 - -0.3 639,023 + +0.3 639,023 + +0.1 639,031 - -0.1 639,031 - -0.1 639,041 - +0.4 639,060 + -0.3 639,060 + +0.0 639,068 - -1.5 639,109 + +0.0 639,111 - +0.4 639,248 + Atu0648 0.12 +1.6 639,254 + Atu0648 0.13 +0.2 639,403 + Atu0648 0.19 +0.3 639,431 + Atu0648 0.20 -0.2 639,456 + Atu0648 0.21 +0.1 639,589 + Atu0648 0.27 +0.2
Or see this region's nucleotide sequence